X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2FwhatsNew.html;h=4b821794e06755ef60c7a2421b4b3faee15327d3;hb=4a9a2fc8a1b1a66b21e66429083f27a6fc8541b9;hp=5bb50f9eb0e177707442c3bc1fd76fad58414dc2;hpb=20bddfcf8ef1a53bce455b7599f8066b8ccba0d4;p=jalview.git
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-
-What's new ?
-
-What's new ?
-Jalview Version 2.1
-The multiple sequence alignment program MAFFT
- is available from the default Web Service list.
-The sequence feature retrieval system using DBFetch from EBI has been replaced
- with DAS Feature fetching capabilities.
-Hide sequences and columns
-Export Annotations and Features
-GFF file reading / writing
-Associate structures with sequences from local PDB files
-Add sequences to exisiting alignment
-Recently opened files / URL lists
-Applet can launch the full application
-Applet has transparency for features (Java 1.2 required)
-Applet has user defined colours parameter
-
-Issues Resolved
-Redundancy Panel reinstalled in the Applet
-Monospaced font - EPS / rescaling bug fixed
-Annotation files with sequence references bug fixed
-
-See the Release History page for details of all
- new features and resolved issues.
-
-
+
+
+
+What's new ?
+
+
+
+ What's new in Jalview 2.10.2 ?
+
+
+ Full details about Jalview 2.10.2 are in the Release Notes, but the
+ highlights are below.
+
+
+ - Update to JABAWS 2.2
Jalview's
+ alignment, protein conservation analysis, and protein disorder and
+ RNA secondary structure prediction services are now provided by JABAWS 2.2.
+ Several of the programs provided as services have been updated, so
+ their options and parameters have changed.
+ - New preferences for opening
+ web pages for database cross-references via the UK Elixir's
+ EMBL-EBI's MIRIAM database and identifiers.org services.
+
+ - Showing and hiding regions
+
+ - Hide
+ insertions in the PopUp menu has changed its behaviour.
+ Prior to 2.10.2, columns were only shown or hidden according
+ to gaps in the sequence under the popup menu. Now, only
+ columns that are gapped in all selected sequences as well as
+ the sequence under the popup menu are hidden, and column
+ visibility outside the selected region is left as is. This
+ makes it easy to filter insertions from the alignment view
+ (just select the region containing insertions to remove)
+ without affecting the rest of the hidden columns.
+
+
+
+ Experimental Features
+
+
+ This release of Jalview includes a new option in the Jalview Desktop
+ that allows you to try out features that are still in development.
+ To access the features described below, please first enable the Tools→Enable
+ Experimental Features option, and then restart Jalview.
+
+
+
+