What's new ?

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2FwhatsNew.html;h=4b821794e06755ef60c7a2421b4b3faee15327d3;hb=91daa39be6c29713a821318497ff347a0569a52a;hp=bd57b81b2859697831859af7babf8ebab04729d5;hpb=b5edbd2a03d16372bc3e8019ddbf3840dcfe38ed;p=jalview.git diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html index bd57b81..4b82179 100755 --- a/help/html/whatsNew.html +++ b/help/html/whatsNew.html @@ -1,30 +1,75 @@ - -What's new ? - -

What's new ?

Jalview Version 2.07

Sequence Fetcher has been added to quickly - retrieve sequences with known ids from several databases.

Sequence Features enhanced to allow - the user to display all features of a Uniprot file on the alignment and subsequently - colour, hide or show overlapping features.

Choose to omit /start-end from sequences when - saving files. This is important for saving files to be used by some programs - which cannot read the original Jalview sequence output with the appended /start-end.

PDB structure viewer enhanced. Mapping - between sequence and structure has been enhanced, colours on the alignment are - reflected in the structure viewer.

Jalview Applet can read - in feature files, PDB files be used as input to HTML form See the website - to find out the new parameters available for the Applet Version of Jalview.

Issues Resolved

Group Editing is possible with Control and mouse click. Alt key and mouse press - does not work as this translates as the middle mouse button, which since 2.04 - is now used to scroll the alignment and change the font size.

HTML export now writes groups and features which were previously missing.

See the Release History page for details of all - new features and resolved issues.

- - + + + +What's new ? + + +

+ What's new in Jalview 2.10.2 ? +

+ Full details about Jalview 2.10.2 are in the Release Notes, but the + highlights are below. +

Update to JABAWS 2.2
Jalview's + alignment, protein conservation analysis, and protein disorder and + RNA secondary structure prediction services are now provided by JABAWS 2.2. + Several of the programs provided as services have been updated, so + their options and parameters have changed.
New preferences for opening + web pages for database cross-references via the UK Elixir's + EMBL-EBI's MIRIAM database and identifiers.org services. +
Showing and hiding regions +
- Hide + insertions in the PopUp menu has changed its behaviour. + Prior to 2.10.2, columns were only shown or hidden according + to gaps in the sequence under the popup menu. Now, only + columns that are gapped in all selected sequences as well as + the sequence under the popup menu are hidden, and column + visibility outside the selected region is left as is. This + makes it easy to filter insertions from the alignment view + (just select the region containing insertions to remove) + without affecting the rest of the hidden columns.

+ Experimental Features +

+ This release of Jalview includes a new option in the Jalview Desktop + that allows you to try out features that are still in development. + To access the features described below, please first enable the Tools→Enable + Experimental Features option, and then restart Jalview. +

Annotation transfer between Chimera and Jalview
Two + new entries in + the Chimera viewer's Chimera menu allow positional annotation to + be exchanged between Chimera and Jalview.

+ +