What's new ?
-Jalview Version 2.08
-Editing can be locked to the selection area. - Any edits made within the locked area do not affect the rest of the alignment.
-Keyboard editing - press F2 to toggle cursor mode On / Off. For a full list - of keyboard controls, look here.
-Create sequence features from searches. - Previously, the regions of sequences highlighted as the result of - searches were added as new regions in the alignment. Now, the sequence region - selected by a search can be used to define named sequences features - attached to the sequence, rather than the alignment. -
-Sequence feature display and rendering has also been enhanced, with - the addition of sequence feature groups (which can be used to show - or hide a set of feature types en masse) and user defined - feature colours as well as transparency controls, using the Sequence Feature Settings - window. The Features file - has also been extended to accomodate these enhancements.
-Alignment annotation and colouring is also considerably - enhanced. Precalculated symbolic and quantitative annotations (text labels, - secondary structure symbols and multiple scalar graphs) can now be - loaded onto alignments via the Annotation - File. Additionally, the Annotation - Colouring dialog box allows an alignment to be coloured based on - any of the graphed quantities with which it is annotated.
-Rendering speed has been improved by disabling anti-aliasing via
- the Smooth Fonts
- option in the View
- menu (its default set in Preferences). In addition, response
- times when editing alignments can be reduced by turning off the automatic
- calculation of amino acid property Consensus (which has been
- reintroduced to the Calculate menu as Autocalculate Consensus).
-
Issues Resolved
-See the Release History page for details of all - new features and resolved issues.
- - + + +What's new ?
+ +Jalview Version 2.2
+Multiple views with different styles, colours, hidden regions for +one alignment
+Easily add, amend and delete sequence features
+"Reload" alignment from File or URL to revert to +original
+"Save" to current filename or "Save As" to +new filename
+New "New Window" button on the +"Output To Textbox" opens output window for quick 'sequence +editing'.
+Set different text colour for dark or light background
+Right align sequence ids
+Set colour of lower case residues in a user defined colour scheme +
+Menu Rearrangements: New Format for alignment +layout and Select for region selection.
+ +Menu item accelerator keys added
+Control-V pastes sequences to active window, Control-Shift-V +pastes to a new window.
+Raise/Minimise alignment and all associated windows from desktop +window's window menu
+Select and colour whole branches of a tree
+'New Window' button on the 'Output to Text box' alignment output +option to open a new alignment window after editing.
+Issues Resolved
+ +Optimisations for large alignments: faster multithreaded +calculations and Undo/Redo system.
+Remove empty columns - if empty columns exist at the end of the +alignment bug fixed.
+DAS feature fetching slowed down, doesn't overload DAS servers
+DAS feature fetching can be cancelled
+Correct display of > and < symbols for feature descriptions +without explicit <html> tags.
+Zoom working in PCA viewer
+Sequence Descriptions retained after running a web service
++
See the Release History page for +details of all new features and resolved issues.
+ +