X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2FwhatsNew.html;h=79cf7c98197d9c18e8884964fbeb4c5d7f93cc17;hb=936d30a2eea9e94c2bb221025e58d7e9ed747262;hp=7f1637cfc80bad695b94d0521d83f46d0f803536;hpb=dddfc81e22789620ebad168ae6a9dc3b0f6c67f2;p=jalview.git
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What's new ?
- What's new ?
-
-
- Jalview 2.8 includes a brand new logo, which you'll see in file browsers, splash screens, and also on the new look Jalview site.
-
-
- In addition to our new look, Jalview 2.8 includes a number of new
- features.. some of which have been in development since July 2010. The
- highlights are below, and - as usual, for a comprehensive list, take a
- look at the Jalview 2.8 Release
- Notes.
-
-
- Highlights in Jalview Desktop Version 2.8
+ What's new ?
Jalview 2.8.0b1 is a bugfix
+ release for Jalview version 2.8.
As usual you can find the
+ highlights below, and the comprehensive list is given in the Jalview 2.8.0b1 Release Notes.
+
+ This bug fix release includes numerous minor enhancements made over
+ the last 12 months. Importantly, it is also the first release that
+ provides Jalview as a trusted application, signed with a certificate
+ donated to us by Certum.
+
+ Enhancements and new features
-
- - New Purine/Pyrimidine colour scheme
- - Colouring of RNA secondary structure by helices. See Nucleic Acid Support
- - Embedded VARNA RNA secondary structure viewer.
-
-
-
- Issues Resolved (a select list - see the release history for full details)
-
-
-
- Issues in the Jalview Desktop
-
- Issues specific to the JalviewLite Applet
-
+ - Allow disorder predictions to be made on the current
+ selection (or visible selection) in the same way that JPred works
+ - allow import of data from gzipped files
+ - Improved per-sequence 'colour-by-annotation' performance
+ - Support '' style escaping of quotes in Newick files
+ - group options for JABAWS service by command line name
+ - Select primary source when selecting authority in database
+ fetcher GUI
+ - COMBINE statement uses current SEQUENCE_REF and GROUP_REF
+ scope to group annotation rows
+ - add .mfa to FASTA file extensions recognised by Jalview
+ - groovy scripting for headless jalview operation
+ - Output in Stockholm format
- Issues affecting both applet and application
+ Bug fixes
+ - Uniprot and PDB database cross-reference fetching works
+ properly
+ - 'View all structures' in the desktop is more reliable
+ - Web services parameter dialog box shows the options enabled
+ for different presets
+ - Interactive creation of RNA secondary structure works more
+ smoothly
+ - Keyboard mode 'P' command jumps to the right place
+ - Improved support for parsing database cross-references via
+ Stockholm and Rfam database
+ - Improved semantics in annotation files for grouping
+ annotation rows associated with particular sequences and groups
+ - More robust DNA->Amino acid translation
+ - Improved Headless-mode operation for DAS annotation
+ retrieval, groovy script execution and alignment figure generation
+ - annotation label tooltip text needs to be wrapped