What's new

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2FwhatsNew.html;h=7bc6de4d46b346bf9999fdd9ccee266b31088471;hb=d360d66235b8e99766ace8330175bd0258a8c07c;hp=dc956a97fb188bc7cbcd1bd5225fd89eefb80a81;hpb=1ccaed89cec493136eb0f5ac22f2942dd8ce9bb0;p=jalview.git diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html index dc956a9..7bc6de4 100755 --- a/help/html/whatsNew.html +++ b/help/html/whatsNew.html @@ -1,30 +1,30 @@ -What's new +What's new ? -

What's new

If you can read this then you'll already have seen some of the recent changes - made to Jalview.
- Jalview takes advantage of some of the more recent user interface developments - in the Java programming language. For instance Jalview is now a multi windowed - application, this keeps all your Jalview windows neatly together in one main - application window.

If you were familiar with the original Jalview, here is a list of important - features you should know about the current development:

Editing sequences is no longer the default when mouse clicking the alignment. - Instead, mouse clicking on the alignment will create a "selection region" - which may be full sequences or groups of residues.
To edit a sequence, the "Shift" key must be held down
To edit groups, either the "Alt" key or the "Control" - key must be held down.
Colours maybe applied to the background, ie the whole alignment, or to selected - regions. If the tickbox "Apply colour to all groups" is ticked (this - is the default), then the colour will be applied to all groups.
Use the right mouse button (apple and click on the mac) to define a selected - region on the alignment as a new group.
Conservation is automatically updated whenever the alignment is edited
There is no "quick draw" option
Edits can be undone! (and redone)

What's new ?

Jalview Version 2.07

Sequence Fetcher has been added to quickly + retrieve sequences with known ids from several databases.

Sequence Features enhanced to allow + the user to display all features of a Uniprot file on the alignment and subsequently + colour, hide or show overlapping features.

Choose to omit /start-end from sequences when + saving files. This is important for saving files to be used by some programs + which cannot read the original Jalview sequence output with the appended /start-end.

PDB structure viewer enhanced. Mapping + between sequence and structure has been enhanced, colours on the alignment are + reflected in the structure viewer.

Jalview Applet can read + in feature files, PDB files be used as input to HTML form See the website + to find out the new parameters available for the Applet Version of Jalview.

Issues Resolved

Group Editing is possible with Control and mouse click. Alt key and mouse press + does not work as this translates as the middle mouse button, which since 2.04 + is now used to scroll the alignment and change the font size.

HTML export now writes groups and features which were previously missing.

See the Release History page for details of all + new features and resolved issues.