X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2FwhatsNew.html;h=9c13b59d5a5643b8b2a2b6a72f80a3f8a3782325;hb=fe3f72a41de913cc633f1f6449d3a6433f301b10;hp=f4da5b51cc6bd7fd068689322200872c09b492c6;hpb=d783fbae7be6592377a870e21b45012dbd7bbe08;p=jalview.git diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html index f4da5b5..9c13b59 100755 --- a/help/html/whatsNew.html +++ b/help/html/whatsNew.html @@ -2,128 +2,55 @@
What's new ?
-If you are reading this then you will already have seen some of the recent changes
- made to Jalview.
- Jalview takes advantage of some of the more recent user interface developments
- in the Java programming language. For instance Jalview is now a multi windowed
- application, this keeps all your Jalview windows neatly together in one main
- application window.
If you were familiar with the original Jalview, here is a list of important - features you should know about the current development:
+Jalview Version 2.08
+Editing can be locked to the + selection area so that any edits made within the locked area do + not unexpectedly shift other parts of the alignment.
+Keyboard editing - press F2 to toggle cursor mode On / Off. For a full list + of keyboard controls, look here.
+Create sequence features from searches. + Previously, the regions of sequences highlighted as the result of + searches were added as new regions in the alignment. Now, the sequence region + selected by a search can be used to define named sequences features + attached to the sequence, rather than the alignment. +
+Sequence feature display and rendering has also been enhanced, with + the addition of sequence feature groups (which can be used to show + or hide a set of features en masse) and user defined + feature colours as well as transparency controls, using the Sequence Feature Settings + window. The Features file + has also been extended to accomodate these enhancements.
+Alignment annotation and colouring is also considerably + enhanced. Precalculated symbolic and quantitative annotations (text labels, + secondary structure symbols and multiple scalar graphs) can now be + loaded onto alignments via the Annotation + File. Additionally, the Annotation + Colouring dialog box allows an alignment to be coloured based on + any of the graphed quantities with which it is annotated.
+Rendering speed has been improved by disabling anti-aliasing via
+ the Smooth Fonts
+ option in the View
+ menu (its default set in Preferences). In addition, response
+ times when editing alignments can be reduced by turning off the automatic
+ calculation of amino acid property Consensus (which has been
+ reintroduced to the Calculate menu as Autocalculate Consensus).
+
Issues Resolved
Release |
- New Features |
- Issues Resolved |
-
2.05b - 15/9/05 |
-
|
-
|
-
2.05 - 30/8/05 |
-
|
-
|
-
2.04 - 24/8/05 |
-
|
-
|
-
2.03 - 18/8/05 |
-
|
-
|
-
2.02 - 18/7/05 |
- - |
|
-
2.01 - 12/7/05 |
-
|
-
|
-
2.0 - 20/6/05 |
-
|
- - |
+
See the Release History page for details of all + new features and resolved issues.