X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2FwhatsNew.html;h=e1b00c4d8cc42b2cac8f7202446613fce070e204;hb=6405be60655fe096cdbff89cccf0a5b12f8b7e80;hp=8484a26b4f948819e798208c8b3362c554463b12;hpb=f37dc08487781352739364a3977a43e9fa4d9176;p=jalview.git
diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html
index 8484a26..e1b00c4 100755
--- a/help/html/whatsNew.html
+++ b/help/html/whatsNew.html
@@ -1,37 +1,74 @@
+
What's new ?
-What's new ?
+
+ What's new ?
+
+
+ Jalview 2.10 is the next major release in the Jalview 2 series. Full
+ details are in the Jalview
+ 2.10 Release Notes, but the highlights are below.
+
+
+ Highlights in Jalview 2.10
+
+ - Ensembl sequence fetcher. Annotated Genes,
+ transcripts and proteins can be retrieved via Jalview's new Ensembl REST
+ client. Support for import of Ensembl data also allows:
+
+ - Sequence variant data. Jalview
+ propagates variant annotation imported via Ensembl onto
+ protein products, complete with associated metadata such as
+ clinical significance.
+ - Aligned locus view. Transcripts
+ retrieved for a gene identifier via the Ensembl or
+ EnsemblGenomes sequence databases are automatically aligned to
+ their reference genome.
+
+ - Working with structures.
+
+ - More accurate structure mappings.
+ Jalview now utilises the PDBe's SIFTS database (at EMBL-EBI)
+ to match structures
+ to UniProt sequences, even for structures containing
+ multiple copies of a sequence.
+ - Import structures as mmCIF. Jalview
+ now downloads data from the EMBL-EBI's PDBe site as mmCIF.
+ This allows very large structures to be imported, such as the HIV virus capsid assembly.
+
+ - UniProt Free Text Search. The new search
+ dialog for UniProt allows you to browse and retrieve sequences
+ from UniProt with free-text search and more structured queries
+ - Reference sequence based alignment
+ visualisation.. When a reference sequence is defined for the
+ alignment, the alignment column ruler is now numbered according to
+ the reference sequence. The reference sequence for alignment views
+ can also be saved and restored from Jalview projects.
+
+
-Jalview Version 2.3
-Jmol 11 integration
-PDB views in Jalview XML
-Slide sequences
-Edit sequence in place
-EMBL CDS features
-DAS Feature mapping
-Feature ordering
-Alignment Properties
-Annotation Scores
-Sort by scores
-Feature/annotation editing in applet
-
-
-Issues Resolved
-
-Headless state operation in 2.2.1
-
Incorrect and unstable DNA pairwise alignment
-
-Cut and paste of sequences with annotation
-
-Feature group display state in XML
-Feature ordering in XML
-2.2.1 applet had no feature transparency
-
-
-See the Release History page for
-details of all new features and resolved issues.