X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=resources%2Flang%2FMessages.properties;h=1f5d4cbfaec2b20c57b1220ab0b6b63e3eb1250e;hb=6066400ed6b0fe288ebbea82389f59838a534706;hp=aafb445ddc307c0a753ef601b7b58c8023f186ef;hpb=61d7d669232e22adc47cac9fe8dd9db291d382fe;p=jalview.git
diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index aafb445..1f5d4cb 100644
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -57,8 +57,10 @@ action.by_pairwise_id = by Pairwise Identity
action.by_id = by Id
action.by_length = by Length
action.by_group = by Group
+action.unmark_as_reference = Unmark as Reference
+action.set_as_reference = Set as Reference
action.remove = Remove
-action.remove_redundancy = Remove Redundancy
+action.remove_redundancy = Remove Redundancy...
action.pairwise_alignment = Pairwise Alignments...
action.by_rna_helixes = by RNA Helices
action.user_defined = User Defined...
@@ -119,7 +121,7 @@ action.save_as_default = Save as default
action.save_as = Save as
action.save = Save
action.cancel_fetch = Cancel Fetch
-action.save_omit_hidden_columns = Save / Omit Hidden Columns
+action.save_omit_hidden_columns = Save / Omit Hidden Regions
action.change_font = Change Font
action.change_font_tree_panel = Change Font (Tree Panel)
action.colour = Colour
@@ -214,6 +216,7 @@ label.none = None
label.above_identity_threshold = Above Identity Threshold
label.show_sequence_features = Show Sequence Features
label.nucleotide = Nucleotide
+label.protein = Protein
label.to_new_alignment = To New Alignment
label.to_this_alignment = Add To This Alignment
label.apply_colour_to_all_groups = Apply Colour To All Groups
@@ -226,14 +229,17 @@ label.documentation = Documentation
label.about = About...
label.show_sequence_limits = Show Sequence Limits
label.feature_settings = Feature Settings...
-label.sequence_features = Sequence Features
label.all_columns = All Columns
label.all_sequences = All Sequences
label.selected_columns = Selected Columns
label.selected_sequences = Selected Sequences
+label.except_selected_sequences = All except selected sequences
label.all_but_selected_region = All but Selected Region (Shift+Ctrl+H)
label.selected_region = Selected Region
label.all_sequences_columns = All Sequences and Columns
+label.hide_insertions = Hide columns gapped for selection
+label.hide_selected_annotations = Hide selected annotations
+label.show_selected_annotations = Show selected annotations
label.group_consensus = Group Consensus
label.group_conservation = Group Conservation
label.show_consensus_histogram = Show Consensus Histogram
@@ -252,6 +258,7 @@ label.chimera_path = Path to Chimera program
label.chimera_path_tip = Jalview will first try any path entered here, else standard installation locations.
Double-click to browse for file.
label.invalid_chimera_path = Chimera path not found or not executable
label.chimera_missing = Chimera structure viewer not found.
Please enter the path to Chimera (if installed),
or download and install UCSF Chimera.
+label.chimera_failed = Error opening Chimera - is it installed?\nCheck path in Preferences, Structure
label.min_colour = Minimum Colour
label.max_colour = Maximum Colour
label.use_original_colours = Use Original Colours
@@ -355,7 +362,7 @@ label.example = Example
label.example_param = Example: {0}
label.select_file_format_before_saving = You must select a file format before saving!
label.file_format_not_specified = File format not specified
-label.alignment_contains_hidden_columns = The Alignment contains hidden columns.\nDo you want to save only the visible alignment?
+label.alignment_contains_hidden_columns = The Alignment contains hidden regions (hidden sequences/columns).\nDo you want to save only the visible alignment?
label.couldnt_save_file = Couldn't save file: {0}
label.error_saving_file = Error Saving File
label.remove_from_default_list = Remove from default list?
@@ -380,6 +387,7 @@ label.automatically_associate_pdb_files_with_sequences_same_name = Do you want t
label.automatically_associate_pdb_files_by_name = Automatically Associate PDB files by name
label.ignore_unmatched_dropped_files_info = Do you want to ignore the {0} files whose names did not match any sequence IDs ?
label.ignore_unmatched_dropped_files = Ignore unmatched dropped files?
+label.view_name_original = Original
label.enter_view_name = Enter View Name
label.enter_label = Enter label
label.enter_label_for_the_structure = Enter a label for the structure?
@@ -476,10 +484,8 @@ label.settings_for_type = Settings for {0}
label.view_full_application = View in Full Application
label.load_associated_tree = Load Associated Tree ...
label.load_features_annotations = Load Features/Annotations ...
-label.export_features = Export Features
-label.export_annotations = Export Annotations
-label.jalview_copy = Copy (Jalview Only)
-label.jalview_cut = Cut (Jalview Only)
+label.export_features = Export Features ...
+label.export_annotations = Export Annotations ...
label.to_upper_case = To Upper Case
label.to_lower_case = To Lower Case
label.toggle_case = Toggle Case
@@ -529,7 +535,10 @@ label.dark_colour = Dark Colour
label.light_colour = Light Colour
label.highlightnode = Left click to select leaves.
Double-click to invert leaves.
Right click to change colour.
label.load_colour_scheme = Load colour scheme
+label.copy_format_from = Copy format from
label.toggle_enabled_views = When enabled, allows many views to be selected.
+label.select_all_views = Select all views
+label.select_many_views = Select many views
label.edit_notes_parameter_set = Click to edit the notes for this parameter set.
label.open_local_file = Open local file
label.enable_automatically_sort_alignment_when_open_new_tree = Enable this to automatically sort
the alignment when you open
a new tree.
@@ -569,12 +578,13 @@ label.conservation = Conservation
label.consensus = Consensus
label.histogram = Histogram
label.logo = Logo
-label.non_positional_features = Non-positional Features
-label.database_references = Database References
+label.non_positional_features = List Non-positional Features
+label.database_references = List Database References
label.share_selection_across_views = Share selection across views
label.scroll_highlighted_regions = Scroll to highlighted regions
label.gap_symbol = Gap Symbol
-label.alignment_colour = Alignment Colour
+label.prot_alignment_colour = Protein Alignment Colour
+label.nuc_alignment_colour = Nucleotide Alignment Colour
label.address = Address
label.port = Port
label.default_browser_unix = Default Browser (Unix)
@@ -595,7 +605,7 @@ label.figure_id_column_width = Figure ID column width
label.use_modeller_output = Use Modeller Output
label.wrap_alignment = Wrap Alignment
label.right_align_ids = Right Align Ids
-label.sequence_name_italics = Seq Name Italics
+label.sequence_name_italics = Italic Sequence Ids
label.open_overview = Open Overview
label.default_colour_scheme_for_alignment = Default Colour Scheme for alignment
label.annotation_shading_default = Annotation Shading Default
@@ -666,10 +676,12 @@ label.discover_pdb_ids = Discover PDB ids
label.text_colour = Text Colour
label.structure = Structure
label.view_structure = View Structure
+label.view_protein_structure = View Protein Structure
+label.view_rna_structure = View Nucleotide Structure
label.clustalx_colours = Clustalx colours
label.above_identity_percentage = Above % Identity
label.create_sequence_details_report_annotation_for = Annotation for {0}
-label.sequece_details_for = Sequece Details for {0}
+label.sequence_details_for = Sequence Details for {0}
label.sequence_name = Sequence Name
label.sequence_description = Sequence Description
label.edit_sequence_name_description = Edit Sequence Name/Description
@@ -687,12 +699,15 @@ label.save_png_image = Save As PNG Image
label.load_tree_for_sequence_set = Load a tree for this sequence set
label.export_image = Export Image
label.vamsas_store = VAMSAS store
-label.translate_cDNA = Translate cDNA
+label.translate_cDNA = Translate as cDNA
+label.linked_view_title = Linked cDNA and protein view
+label.align = Align
label.extract_scores = Extract Scores
-label.get_cross_refs = Get Cross References
+label.get_cross_refs = Get Cross-References
label.sort_alignment_new_tree = Sort Alignment With New Tree
label.add_sequences = Add Sequences
label.new_window = New Window
+label.split_window = Split Window
label.refresh_available_sources = Refresh Available Sources
label.use_registry = Use Registry
label.add_local_source = Add Local Source
@@ -731,7 +746,7 @@ label.fetch_all_param = Fetch all {0}
label.paste_new_window = Paste To New Window
label.settings_for_param = Settings for {0}
label.view_params = View {0}
-label.select_all_views = Select all views
+label.all_views = All Views
label.align_sequences_to_existing_alignment = Align sequences to an existing alignment
label.realign_with_params = Realign with {0}
label.calcname_with_default_settings = {0} with Defaults
@@ -756,7 +771,9 @@ label.transformed_points_for_params = Transformed points for {0}
label.graduated_color_for_params = Graduated Feature Colour for {0}
label.select_backgroud_colour = Select Background Colour
label.invalid_font = Invalid Font
-label.separate_multiple_accession_ids = Separate multiple accession ids with semi colon ";"
+label.separate_multiple_accession_ids = Enter one or more PDB Ids
+label.separate_multiple_query_values = Enter one or more {0}s separated by a semi-colon ";"
+label.search_all = Enter one or more search values separated by a semi-colon ";" (Note: This Searches the entire PDB database)
label.replace_commas_semicolons = Replace commas with semi-colons
label.parsing_failed_syntax_errors_shown_below_param = Parsing failed. Syntax errors shown below {0}
label.parsing_failed_unrecoverable_exception_thrown_param = \nParsing failed. An unrecoverable exception was thrown\:\n {0}
@@ -773,7 +790,6 @@ label.use_sequence_id_1 = Use $SEQUENCE_ID$ or $SEQUENCE_ID=//=$
label.use_sequence_id_2 = \nto embed sequence id in URL
label.ws_parameters_for = Parameters for {0}
label.switch_server = Switch server
-label.open_jabaws_web_page = Opens the JABAWS server's homepage in web browser
label.choose_jabaws_server = Choose a server for running this service
label.services_at = Services at {0}
label.rest_client_submit = {0} using {1}
@@ -1132,7 +1148,12 @@ status.no_das_sources_active = No DAS Sources Active
status.das_feature_fetching_cancelled = DAS Feature Fetching Cancelled
status.das_feature_fetching_complete = DAS Feature Fetching Complete
status.fetching_db_refs = Fetching db refs
+status.loading_cached_pdb_entries = Loading Cached PDB Entries
+status.searching_for_pdb_structures = Searching for PDB Structures
+status.opening_file = opening file
+status.colouring_chimera = Colouring Chimera
label.font_doesnt_have_letters_defined = Font doesn't have letters defined\nso cannot be used\nwith alignment data
+label.font_too_small = Font size is too small
label.error_loading_file_params = Error loading file {0}
label.error_loading_jalview_file = Error loading Jalview file
warn.out_of_memory_when_action = Out of memory when {0}\!\!\nSee help files for increasing Java Virtual Machine memory.
@@ -1174,10 +1195,17 @@ label.normalise_group_logo = Normalise Group Logo
label.show_histogram = Show Histogram
label.show_logo = Show Logo
label.normalise_logo = Normalise Logo
-label.no_colour_selection_in_scheme = Please, make a colour selection before to apply colour scheme
+label.no_colour_selection_in_scheme = Please make a colour selection before applying colour scheme
label.no_colour_selection_warn = Error saving colour scheme
-label.select_by_annotation = Select By Annotation
-action.select_by_annotation = Select by Annotation...
+label.open_split_window? = Would you like to open as a split window, with cDNA and protein linked?
+label.open_split_window = Open split window
+label.no_mappings = No mappings found
+label.mapping_failed = No sequence mapping could be made between the alignments.
A mapping requires sequence names to match, and equivalent sequence lengths.
+action.no = No
+action.yes = Yes
+label.for = for
+label.select_by_annotation = Select/Hide Columns by Annotation
+action.select_by_annotation = Select/Hide Columns by Annotation...
label.threshold_filter = Threshold Filter
action.hide = Hide
action.select = Select
@@ -1187,5 +1215,33 @@ label.turn = Turn
label.select_all = Select All
label.structures_filter = Structures Filter
label.search_filter = Search Filter
-label.display_name = Display Label
label.description = Description
+label.include_description= Include Description
+action.back = Back
+label.hide_insertions = Hide Insertions
+label.mark_as_representative = Mark as representative
+label.open_jabaws_web_page = Open JABAWS web page
+label.opens_the_jabaws_server_homepage = Opens the JABAWS server's homepage in web browser
+label.pdb_sequence_getcher = PDB Sequence Fetcher
+label.result = result
+label.results = results
+label.structure_chooser = Structure Chooser
+label.select = Select :
+label.invert = Invert
+label.select_pdb_file = Select PDB File
+info.select_filter_option = Select Filter Option/Manual Entry
+info.associate_wit_sequence = Associate with Sequence
+label.search_result = Search Result
+label.found_structures_summary = Found Structures Summary
+label.configure_displayed_columns = Configure Displayed Columns
+label.start_jalview = Start Jalview
+label.biojs_html_export = BioJS
+label.scale_as_cdna = Scale protein residues to codons
+label.scale_protein_to_cdna = Scale Protein to cDNA
+label.scale_protein_to_cdna_tip = Make protein residues same width as codons in split frame views
+info.select_annotation_row = Select Annotation Row
+info.enter_search_text_here = Enter Search Text Here
+info.enter_search_text_to_enable = Enter Search Text to Enable
+info.search_in_annotation_label = Search in {0} Label
+info.search_in_annotation_description = Search in {0} Description
+info.change_threshold_mode_to_enable = Change Threshold Mode to Enable