label.pdb_sequence_mapping = PDB - Sequence Mapping
label.pca_details = PCA details
+label.pasimap_details = PaSiMap details
label.redundancy_threshold_selection = Redundancy threshold selection
label.user_defined_colours = User defined colours
label.jalviewLite_release = JalviewLite - Release {0}
@@ -514,6 +520,7 @@ label.delete_gaps = Delete {0} gaps
label.sequence_details = Sequence Details
label.viewer_help = {0} Help
label.close_viewer = Close Viewer
+label.close_viewers = Close Viewers
label.confirm_close_viewer = This will close Jalview''s connection to {0}.
Do you want to close the {1} window as well?
label.all = All
label.sort_by = Sort alignment by
@@ -549,6 +556,7 @@ label.select_colour_maximum_value = Select Colour for Maximum Value
label.open_url_param = Open URL {0}
label.open_url_seqs_param = Open URL ({0}..) ({1} seqs)
label.load_pdb_file_associate_with_sequence = Load a PDB file and associate it with sequence {0}
+label.load_pae_matrix_file_associate_with_structure = Load a PAE matrix file and associate it with structure {0}
label.reveal_hidden_columns = Reveal Hidden Columns with Right Mouse Button
label.dark_colour = Dark Colour
label.light_colour = Light Colour
@@ -697,12 +705,13 @@ label.sequence_details_for = Sequence Details for {0}
label.sequence_name = Sequence Name
label.sequence_description = Sequence Description
label.edit_sequence_name_description = Edit Sequence Name/Description
-label.spaces_converted_to_underscores = Spaces have been converted to _
+label.spaces_converted_to_underscores = Spaces have been converted to underscores (_)
label.no_spaces_allowed_sequence_name = No spaces allowed in Sequence Name
label.select_outline_colour = Select Outline Colour
label.web_browser_not_found_unix = Unixers\: Couldn't find default web browser.\nAdd the full path to your browser in Preferences."
label.web_browser_not_found = Web browser not found
label.select_pdb_file_for = Select a PDB file for {0}
+label.select_pae_matrix_file_for = Select a PAE matrix file for {0}
label.html = HTML
label.wrap = Wrap
label.show_database_refs = Show Database Refs
@@ -1016,6 +1025,8 @@ label.add_new_sbrs_service = Add a new Simple Bioinformatics Rest Service
label.edit_sbrs_entry = Edit Simple Bioinformatics Rest Service entry
label.pca_recalculating = Recalculating PCA
label.pca_calculating = Calculating PCA
+label.pasimap_recalculating = Recalculating PaSiMap
+label.pasimap_calculating = Calculating PaSiMap
label.select_foreground_colour = Choose foreground colour
label.select_colour_for_text = Select Colour for Text
label.adjust_foreground_text_colour_threshold = Adjust Foreground Text Colour Threshold
@@ -1342,6 +1353,7 @@ label.annotation_description = Annotation Description
label.edit_annotation_name_description = Edit Annotation Name/Description
label.alignment = alignment
label.pca = PCA
+label.pasimap = PaSiMap
label.create_image_of = Create {0} image of {1}
label.click_to_edit = Click to edit, right-click for menu
label.backupfiles_confirm_delete = Confirm delete
@@ -1438,3 +1450,21 @@ label.memory_example_tooltip = The memory allocated to Jalview is the smaller of
warning.wrong_jvm_version_title = Wrong Java Version
warning.wrong_jvm_version_message = The Java version being used (Java {0}) may lead to problems.\nThis installation of Jalview should be used with Java {1}.
label.alphafold_reliability = Alphafold Reliability
+label.tftype_default = Default
+label.tftype_plddt = pLDDT
+label.optional = (optional)
+label.choose_tempfac_type = Choose Temperature Factor type
+label.interpret_tempfac_as = Interpret Temperature Factor as
+label.add_pae_matrix_file = Add PAE matrix file
+label.nothing_selected = Nothing selected
+prompt.analytics_title = Jalview Usage Statistics
+prompt.analytics = Do you want to help make Jalview better by enabling the collection of usage statistics with Plausible analytics?\nYou can enable or disable usage tracking in the preferences.
+label.working_ellipsis = Working ...
+action.show_groups_on_matrix = Show groups on matrix
+action.show_groups_on_matrix_tooltip = When enabled, clusters defined on the matrix's associated tree or below the assigned threshold are shown as different colours on the matrix annotation row
+action.show_tree_for_matrix = Show tree for matrix
+action.show_tree_for_matrix_tooltip = Opens a tree viewer to display the average distance tree for the matrix
+action.cluster_matrix = Cluster matrix
+action.clustering_matrix_for = Calculating tree for matrix {0} and clustering at {1}
+action.cluster_matrix_tooltip = Computes an average distance tree for the matrix and displays it
+