X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=resources%2Flang%2FMessages.properties;h=b448b4c70f1b36c9ce62603b780e86dbe5ecee19;hb=b26fefd329b60deb2025aa28cdbaae30bfb58382;hp=13fdc93e507eb2c3278a148b3087a150078a9c39;hpb=338c105e7b8d9490dc2abf825255c4aa30d52fcd;p=jalview.git

diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index 13fdc93..b448b4c 100644
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -118,6 +118,7 @@ action.paste_annotations = Paste Annotations
 action.format = Format
 action.select = Select
 action.new_view = New View
+action.new_structure_view_with = Open new structure view with {0}
 action.close = Close
 action.add = Add
 action.save_as = Save as...
@@ -328,6 +329,7 @@ label.successfully_pasted_alignment_file = Successfully pasted alignment file
 label.paste_your_alignment_file = Paste your alignment file here
 label.paste_your = Paste your
 label.finished_searching = Finished searching
+label.subsequence_matches_found = {0} subsequence matches found
 label.search_results= Search results {0} : {1}
 label.found_match_for = Found match for {0}
 label.font = Font:
@@ -511,6 +513,12 @@ label.load_tree_file = Load a tree file
 label.retrieve_parse_sequence_database_records_alignment_or_selected_sequences = Retrieve and parse sequence database records for the alignment or the currently selected sequences
 label.standard_databases = Standard Databases
 label.fetch_embl_uniprot = Fetch from EMBL/EMBLCDS or Uniprot/PDB and any selected DAS sources
+label.fetch_uniprot_references = Fetch Uniprot references
+label.search_3dbeacons = 3D-Beacons Search
+label.find_models_from_3dbeacons = Search 3D-Beacons for 3D structures and models
+label.3dbeacons = 3D-Beacons
+label.fetch_references_for = Fetch database references for {0} sequences ?
+label.fetch_references_for_3dbeacons = 3D Beacons needs Uniprot References. Fetch database references for {0} sequences ?
 label.reset_min_max_colours_to_defaults = Reset min and max colours to defaults from user preferences.
 label.align_structures_using_linked_alignment_views = Superpose structures using {0} selected alignment view(s)
 label.threshold_feature_display_by_score = Threshold the feature display by score.
@@ -617,8 +625,8 @@ label.editing = Editing
 label.web_services = Web Services
 label.right_click_to_edit_currently_selected_parameter = Right click to edit currently selected parameter.
 label.let_jmol_manage_structure_colours = Let Jmol manage structure colours
-label.fetch_chimera_attributes = Fetch Chimera attributes
-label.fetch_chimera_attributes_tip = Copy Chimera attribute to Jalview feature
+label.fetch_viewer_attributes = Fetch {0} attributes
+label.fetch_viewer_attributes_tip = Copy {0} attribute to Jalview feature
 label.marks_leaves_tree_not_associated_with_sequence = Marks leaves of tree not associated with a sequence
 label.index_web_services_menu_by_host_site = Index web services in menu by the host site
 label.option_want_informed_web_service_URL_cannot_be_accessed_jalview_when_starts_up = Check this option if you want to be informed<br>when a web service URL cannot be accessed by Jalview<br>when it starts up
@@ -710,7 +718,7 @@ error.superposition_failed = Superposition failed: {0}
 label.insufficient_residues = Not enough aligned residues ({0}) to perform superposition
 label.create_viewer_attributes = Write Jalview features
 label.create_viewer_attributes_tip = Set structure residue attributes for Jalview features
-label.attributes_set = {0} attribute values set on Chimera
+label.attributes_set = {0} attribute values set on {1}
 label.sort_alignment_by_tree = Sort Alignment By Tree
 label.mark_unlinked_leaves = Mark Unlinked Leaves
 label.associate_leaves_with = Associate Leaves With
@@ -931,7 +939,7 @@ label.groovy_support_failed = Jalview Groovy Support Failed
 label.couldnt_create_groovy_shell = Couldn't create the groovy Shell. Check the error log for the details of what went wrong.
 error.unsupported_version_calcIdparam = Unsupported Version for calcIdparam {0}
 error.implementation_error_cant_reorder_tree = Implementation Error: Can't reorder this tree. Not DefaultMutableTreeNode.
-error.invalid_value_for_option = Invalid value {0} for option {1}
+error.invalid_value_for_option = Invalid value ''{0}'' for option ''{1}''
 error.implementation_error_cannot_import_vamsas_doc = Implementation Error - cannot import existing vamsas document into an existing session, Yet!
 label.vamsas_doc_couldnt_be_opened_as_new_session = VAMSAS Document could not be opened as a new session - please choose another
 error.setstatus_called_non_existent_job_pane = setStatus called for non-existent job pane {0}
@@ -955,7 +963,6 @@ error.implementation_error_minlen_must_be_greater_zero = Implementation error: m
 error.implementation_error_msawbjob_called = Implementation error - StartJob(MsaWSJob) called on a WSJobInstance {0}
 error.implementation_error_cannot_attach_ws_menu_entry = IMPLEMENTATION ERROR: cannot attach WS Menu Entry without service handle reference!
 error.parameter_migration_not_implemented_yet = Parameter migration not implemented yet
-error.implementation_error_cannot_set_jaba_option = Implementation error: cannot set Jaba Option to a value outside its allowed value range!
 error.implementation_error_valuetype_doesnt_support_jabaws_type = IMPLEMENTATION ERROR: jalview.ws.params.ValueConstrainI.ValueType does not support the JABAWS type : {0}
 error.cannot_create_jabaws_param_set = Cannot create a JabaWSParamSet from non-JabaWS parameters
 error.cannot_set_arguments_to_jabaws_param_set = Cannot set arguments to a JabaWSParamSet that are not JabaWS arguments
@@ -1049,7 +1056,6 @@ exception.unable_to_create_internet_config = Unable to create an Internet Config
 exception.invocation_target_calling_url = InvocationTargetException while calling openURL: {0}
 exception.illegal_access_calling_url = IllegalAccessException while calling openURL: {0}
 exception.interrupted_launching_browser = InterruptedException while launching browser: {0}
-exception.ebiembl_retrieval_failed_on = EBI EMBL XML retrieval failed on {0}:{1}
 exception.no_pdb_records_for_chain = No PDB Records for {0} chain {1}
 exception.unexpected_handling_rnaml_translation_for_pdb = Unexpected exception when handling RNAML translation of PDB data
 exception.couldnt_recover_sequence_properties_for_alignment = Couldn't recover sequence properties for alignment
@@ -1101,6 +1107,8 @@ status.collecting_job_results = Collecting job results.
 status.fetching_db_refs = Fetching db refs
 status.loading_cached_pdb_entries = Loading Cached PDB Entries
 status.searching_for_pdb_structures = Searching for PDB Structures
+status.searching_3d_beacons = Searching 3D Beacons
+status.no_structures_discovered_from_3d_beacons = No models discovered from 3D Beacons
 status.opening_file_for = opening file for
 status.colouring_structures = Colouring structures
 label.font_doesnt_have_letters_defined = Font doesn't have letters defined\nso cannot be used\nwith alignment data
@@ -1134,6 +1142,7 @@ label.add_annotations_for = Add annotations for
 action.choose_annotations = Choose Annotations...
 label.choose_annotations = Choose Annotations
 label.find = Find
+label.in = in
 label.invalid_search = Search string invalid
 error.invalid_regex = Invalid regular expression
 label.ignore_gaps_consensus = Ignore Gaps In Consensus