X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=runner%2Fcompbio%2Fpipeline%2F_jpred%2FHit.java;fp=runner%2Fcompbio%2Fpipeline%2F_jpred%2FHit.java;h=0000000000000000000000000000000000000000;hb=b19d5c38c97cf895fc3379a918b5dcf1f3f2031e;hp=5de8e2c715455f018207607d241f454c9626d155;hpb=b7a076f21e11b8cfa99f9e52759dcff702b957fd;p=jabaws.git

diff --git a/runner/compbio/pipeline/_jpred/Hit.java b/runner/compbio/pipeline/_jpred/Hit.java
deleted file mode 100644
index 5de8e2c..0000000
--- a/runner/compbio/pipeline/_jpred/Hit.java
+++ /dev/null
@@ -1,75 +0,0 @@
-/* Copyright (c) 2011 Peter Troshin
- *  
- *  JAva Bioinformatics Analysis Web Services (JABAWS) @version: 2.0     
- * 
- *  This library is free software; you can redistribute it and/or modify it under the terms of the
- *  Apache License version 2 as published by the Apache Software Foundation
- * 
- *  This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without
- *  even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache 
- *  License for more details.
- * 
- *  A copy of the license is in apache_license.txt. It is also available here:
- * @see: http://www.apache.org/licenses/LICENSE-2.0.txt
- * 
- * Any republication or derived work distributed in source code form
- * must include this copyright and license notice.
- */
-package compbio.pipeline._jpred;
-
-import java.util.Comparator;
-
-public class Hit {
-    String name;
-    String number;
-    String accession;
-    String seq;
-    String evalue;
-
-    @Override
-    public String toString() {
-	return "accession=" + accession + ", name=" + name + ", num=" + number
-		+ ", evalue=" + evalue + "\n"; // + ", seq=" + seq +
-    }
-
-    @Override
-    public int hashCode() {
-	final int prime = 31;
-	int result = 1;
-	result = prime * result + ((name == null) ? 0 : name.hashCode());
-	return result;
-    }
-
-    @Override
-    public boolean equals(Object obj) {
-	if (this == obj)
-	    return true;
-	if (obj == null)
-	    return false;
-	if (getClass() != obj.getClass())
-	    return false;
-	Hit other = (Hit) obj;
-	if (name == null) {
-	    if (other.name != null)
-		return false;
-	} else if (!name.equals(other.name))
-	    return false;
-	return true;
-    }
-
-    public static final class NumberComporator implements Comparator<Hit> {
-	@Override
-	public int compare(Hit o1, Hit o2) {
-	    return Integer.valueOf(o1.number).compareTo(
-		    Integer.valueOf(o2.number));
-	}
-    }
-
-    public static final class EvalueComporator implements Comparator<Hit> {
-	@Override
-	public int compare(Hit o1, Hit o2) {
-	    return Double.valueOf(o1.evalue).compareTo(
-		    Double.valueOf(o2.evalue));
-	}
-    }
-}
\ No newline at end of file