X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=schemas%2Fjalview.xsd;h=0138f6332ca02f293b928287ab93d8f1eb2d78bc;hb=6fb502e4a8749d1d98f5442c3b8156ab47996b77;hp=e1fbb677055b34925b5f5ac382e5263f04523953;hpb=a2094092396efa4d6736b11f3b1e1415098c3d12;p=jalview.git

diff --git a/schemas/jalview.xsd b/schemas/jalview.xsd
index e1fbb67..0138f63 100755
--- a/schemas/jalview.xsd
+++ b/schemas/jalview.xsd
@@ -1,20 +1,20 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+  Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+  Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+  
+  This file is part of Jalview.
+  
+  Jalview is free software: you can redistribute it and/or
+  modify it under the terms of the GNU General Public License 
+  as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+   
+  Jalview is distributed in the hope that it will be useful, but 
+  WITHOUT ANY WARRANTY; without even the implied warranty 
+  of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+  PURPOSE.  See the GNU General Public License for more details.
+  
+  You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
 -->
 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.ac.uk/jalview/version2" xmlns:jalview="www.jalview.org/colours" xmlns:jv="www.jalview.org" xmlns:jvws="www.jalview.org/xml/wsparamset" targetNamespace="www.jalview.org" elementFormDefault="qualified" attributeFormDefault="unqualified">
 		<xs:import namespace="www.vamsas.ac.uk/jalview/version2" schemaLocation="vamsas.xsd"/>
@@ -260,7 +260,9 @@
 							type="xs:boolean" use="optional" default="true" />
 						<xs:attribute name="showSequenceLogo"
 							type="xs:boolean" use="optional" default="false" />
-						<xs:attribute name="id" type="xs:string"
+						<xs:attribute name="normaliseSequenceLogo"
+              type="xs:boolean" use="optional" default="false" />
+            <xs:attribute name="id" type="xs:string"
 							use="optional">
 							<xs:annotation>
 								<xs:documentation>
@@ -290,6 +292,12 @@
 										type="xs:string" />
 									<xs:attribute name="threshold"
 										type="xs:float" />
+	                <xs:attribute name="perSequence" 
+	                type="xs:boolean" 
+	                use="optional" />
+	                <xs:attribute name="predefinedColours" 
+                  type="xs:boolean" 
+                  use="optional" />
 								</xs:complexType>
 							</xs:element>
 							<xs:element name="hiddenColumns"
@@ -369,6 +377,8 @@
 							type="xs:boolean" use="optional" default="true" />
 						<xs:attribute name="showSequenceLogo"
 							type="xs:boolean" use="optional" default="false" />
+            <xs:attribute name="normaliseSequenceLogo"
+              type="xs:boolean" use="optional" default="false" />
 						<xs:attribute name="ignoreGapsinConsensus"
 							type="xs:boolean" use="optional" default="true" />