X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=schemas%2Fjalview.xsd;h=adaa3ee8ecd0804efa8c434ddc5d81c6a29de5b2;hb=071c3341c69314363376d9af7b5537141a40de54;hp=48824e78faceb1346fb0bf07e233936de602296f;hpb=aa4e99f8937ce22963cf32f1e92f174ee52ad7ee;p=jalview.git
diff --git a/schemas/jalview.xsd b/schemas/jalview.xsd
index 48824e7..adaa3ee 100755
--- a/schemas/jalview.xsd
+++ b/schemas/jalview.xsd
@@ -10,6 +10,11 @@
Public License for more details. * * You should have received a copy of the
GNU General Public License along with Jalview. If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file. -->
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@@ -30,22 +36,28 @@
-
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additional
@@ -104,8 +116,9 @@
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Flag
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Flag
@@ -166,8 +180,9 @@
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Flag
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-
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An
@@ -222,66 +237,109 @@
-
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- Reference to a viewer showing RNA structure
- for this sequence. Schema supports one viewer showing multiple
- annotations for multiple sequences, though currently only one
- annotation for one sequence (gapped or trimmed) is used
+
+ Reference to a viewer showing
+ RNA structure for this sequence.
+ Schema supports one viewer
+ showing multiple annotations for
+ multiple sequences, though
+ currently only one annotation
+ for one sequence (gapped or
+ trimmed) is used
-
-
-
+
+
- id attribute of Annotation in
- vamsasModel for
- the secondary structure annotation shown
- in the viewer
+
+ id attribute
+ of
+ Annotation
+ in
+ vamsasModel
+ for the
+ secondary
+ structure
+ annotation
+ shown in the
+ viewer
-
+
- if true the RNA structure is shown with gaps, if false without
+
+ if true the
+ RNA
+ structure is
+ shown with
+ gaps, if
+ false
+ without
-
+
- name of the project jar entry that holds
- the VARNA viewer state for the structure
+
+ name of the
+ project jar
+ entry that
+ holds the
+ VARNA viewer
+ state for
+ the
+ structure
-
-
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+
- An id unique to the RNA viewer panel
+
+ An id unique to the RNA
+ viewer panel
-
+
- horizontal position of split pane divider
+
+ horizontal position of
+ split pane divider
-
+
- Index of the selected structure in the
- viewer panel
+
+ Index of the selected
+ structure in the viewer
+ panel
@@ -385,6 +443,16 @@
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@@ -428,6 +496,8 @@
use="optional" default="true" />
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@@ -482,6 +554,8 @@
+ Set for trees associated with columns of an alignment, sequence or annotation row
+ Refers to annotation row the tree is provided by
@@ -493,6 +567,51 @@
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+ endpoints of X, Y and Z axes in that order
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@@ -631,5 +750,46 @@
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+ parameters that condition a similarity score calculation
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+ The results of a PCA calculation
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