X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=schemas%2Fvamsas.xsd;fp=schemas%2Fvamsas.xsd;h=0000000000000000000000000000000000000000;hb=4f77328104498504339216829abf5ea87e2791ec;hp=22b7aac75111e71bb35d2817f5f7ab8ad52bb6c5;hpb=2b8c0785318a3528e1876e8e2dd48b7d831eae69;p=jalview.git diff --git a/schemas/vamsas.xsd b/schemas/vamsas.xsd deleted file mode 100755 index 22b7aac..0000000 --- a/schemas/vamsas.xsd +++ /dev/null @@ -1,285 +0,0 @@ - - - - - - - - - - - - - - - developed after mapRangeType from http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes - - - This effectively represents a java.util.MapList object - - - - - - a region from start to end inclusive - - - - - - - - - a region from start to end inclusive - - - - - - - - - - number of dictionary symbol widths involved in each - mapped position on this sequence (for example, 3 for a dna sequence exon - region that is being mapped to a protein sequence). This is optional, - since the unit can be usually be inferred from the dictionary type of - each sequence involved in the mapping. - - - - - number of dictionary symbol widths involved in each - mapped position on this sequence (for example, 3 for a dna sequence exon - region that is being mapped to a protein sequence). This is optional, - since the unit can be usually be inferred from the dictionary type of - each sequence involved in the mapping. - - - - - - - - Represent the jalview.datamodel.Mapping object - it also provides - a way of storing sequences that are mapped 'to' without adding them - to the sequence set (which will mean they are then added to the alignment too). - - - - - - - - - - - - The sequence whose dataset sequence is to be referenced here - - - - - - - - - - - - - - - - - - specifies a series of aligned codons from an associated DNA sequence alignment that when translated correspond to columns of a peptide alignment. - Element may have either all pos1,2,3 attributes specified, or none at all (indicating a gapped column with no translated peptide). - - - - - - - - - - - - - - a Mapping entry and an associated protein sequence - - - - - - - - internal jalview id for the dnasq for this mapping. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - dataset sequence id for this sequence. Will be created as union of sequences. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - height in pixels for the graph if this is a graph-type annotation. - - - - - - - - - - - is an autocalculated annotation row - - - is to be shown below the alignment - introduced in Jalview 2.8 for visualizing T-COFFEE alignment scores - - Optional string identifier used to group sets of annotation produced by a particular calculation. Values are opaque strings but have semantic meaning to Jalview's renderer, data importer and calculation system. - - - - - - - - - - - - - - - - - - - - - reference to set where jalview will gather the dataset sequences for all sequences in the set. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -