X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fext%2Fvamsas%2FMuscleWSSoapBindingStub.java;h=026066c39d5655ce64e5c5304abe770e1bc495e3;hb=7891791fe9491633fac20718d2ca6d4cc47bde18;hp=f7320605f5914864c3fedab4c8b0073d052adc67;hpb=8a6fa9ea9900d0f106529c3f6283e7f9d76dd2cb;p=jalview.git

diff --git a/src/ext/vamsas/MuscleWSSoapBindingStub.java b/src/ext/vamsas/MuscleWSSoapBindingStub.java
index f732060..026066c 100755
--- a/src/ext/vamsas/MuscleWSSoapBindingStub.java
+++ b/src/ext/vamsas/MuscleWSSoapBindingStub.java
@@ -1,44 +1,29 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- */
-/*
- * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
- *
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
- *
  * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package ext.vamsas;
 
 public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
         implements ext.vamsas.MuscleWS
 {
-  static org.apache.axis.description.OperationDesc[] _operations;
+  private static final org.apache.axis.description.OperationDesc[] _operations;
 
   static
   {
@@ -311,6 +296,7 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
     }
   }
 
+  @Override
   public vamsas.objects.simple.WsJobId align(
           vamsas.objects.simple.SequenceSet seqSet)
           throws java.rmi.RemoteException
@@ -330,8 +316,8 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
     setRequestHeaders(_call);
     setAttachments(_call);
 
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-    { seqSet });
+    java.lang.Object _resp = _call
+            .invoke(new java.lang.Object[] { seqSet });
 
     if (_resp instanceof java.rmi.RemoteException)
     {
@@ -352,6 +338,7 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
     }
   }
 
+  @Override
   public vamsas.objects.simple.Alignment getalign(java.lang.String job_id)
           throws java.rmi.RemoteException
   {
@@ -371,8 +358,8 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
     setRequestHeaders(_call);
     setAttachments(_call);
 
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-    { job_id });
+    java.lang.Object _resp = _call
+            .invoke(new java.lang.Object[] { job_id });
 
     if (_resp instanceof java.rmi.RemoteException)
     {
@@ -393,6 +380,7 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
     }
   }
 
+  @Override
   public vamsas.objects.simple.MsaResult getResult(java.lang.String job_id)
           throws java.rmi.RemoteException
   {
@@ -412,8 +400,8 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
     setRequestHeaders(_call);
     setAttachments(_call);
 
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-    { job_id });
+    java.lang.Object _resp = _call
+            .invoke(new java.lang.Object[] { job_id });
 
     if (_resp instanceof java.rmi.RemoteException)
     {
@@ -434,6 +422,7 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
     }
   }
 
+  @Override
   public vamsas.objects.simple.WsJobId cancel(java.lang.String jobId)
           throws java.rmi.RemoteException
   {
@@ -452,8 +441,7 @@ public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
     setRequestHeaders(_call);
     setAttachments(_call);
 
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-    { jobId });
+    java.lang.Object _resp = _call.invoke(new java.lang.Object[] { jobId });
 
     if (_resp instanceof java.rmi.RemoteException)
     {