X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fext%2Fvamsas%2FSeqSearchServiceSoapBindingStub.java;h=da7a7a8f810258f6e7b9bd3d0064f80b9eb2409a;hb=ca4e251a5e7dfb71109a8328d60bb237a6ce9944;hp=118c893254d91d9f6262ff36d97beee830d47d27;hpb=a45774ee31d9f35d4eff46d54d7deab719afb092;p=jalview.git
diff --git a/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java b/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
index 118c893..da7a7a8 100644
--- a/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
+++ b/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
@@ -1,488 +1,491 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
- */
-package ext.vamsas;
-
-public class SeqSearchServiceSoapBindingStub extends
- org.apache.axis.client.Stub implements ext.vamsas.SeqSearchI
-{
- private java.util.Vector cachedSerClasses = new java.util.Vector();
-
- private java.util.Vector cachedSerQNames = new java.util.Vector();
-
- private java.util.Vector cachedSerFactories = new java.util.Vector();
-
- private java.util.Vector cachedDeserFactories = new java.util.Vector();
-
- static org.apache.axis.description.OperationDesc[] _operations;
-
- static
- {
- _operations = new org.apache.axis.description.OperationDesc[5];
- _initOperationDesc1();
- }
-
- private static void _initOperationDesc1()
- {
- org.apache.axis.description.OperationDesc oper;
- oper = new org.apache.axis.description.OperationDesc();
- oper.setName("getDatabase");
- oper.setReturnType(new javax.xml.namespace.QName(
- "http://www.w3.org/2001/XMLSchema", "string"));
- oper.setReturnClass(java.lang.String.class);
- oper.setReturnQName(new javax.xml.namespace.QName("",
- "getDatabaseReturn"));
- oper.setStyle(org.apache.axis.constants.Style.RPC);
- oper.setUse(org.apache.axis.constants.Use.ENCODED);
- _operations[0] = oper;
-
- oper = new org.apache.axis.description.OperationDesc();
- oper.setName("getResult");
- oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
- new javax.xml.namespace.QName(
- "http://www.w3.org/2001/XMLSchema", "string"),
- java.lang.String.class,
- org.apache.axis.description.ParameterDesc.IN, false, false);
- oper.setReturnType(new javax.xml.namespace.QName(
- "simple.objects.vamsas", "SeqSearchResult"));
- oper.setReturnClass(vamsas.objects.simple.SeqSearchResult.class);
- oper.setReturnQName(new javax.xml.namespace.QName("", "getResultReturn"));
- oper.setStyle(org.apache.axis.constants.Style.RPC);
- oper.setUse(org.apache.axis.constants.Use.ENCODED);
- _operations[1] = oper;
-
- oper = new org.apache.axis.description.OperationDesc();
- oper.setName("psearch");
- oper.addParameter(new javax.xml.namespace.QName("", "al"),
- new javax.xml.namespace.QName("simple.objects.vamsas",
- "Alignment"), vamsas.objects.simple.Alignment.class,
- org.apache.axis.description.ParameterDesc.IN, false, false);
- oper.addParameter(new javax.xml.namespace.QName("", "database"),
- new javax.xml.namespace.QName(
- "http://www.w3.org/2001/XMLSchema", "string"),
- java.lang.String.class,
- org.apache.axis.description.ParameterDesc.IN, false, false);
- oper.setReturnType(new javax.xml.namespace.QName(
- "simple.objects.vamsas", "WsJobId"));
- oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
- oper.setReturnQName(new javax.xml.namespace.QName("", "psearchReturn"));
- oper.setStyle(org.apache.axis.constants.Style.RPC);
- oper.setUse(org.apache.axis.constants.Use.ENCODED);
- _operations[2] = oper;
-
- oper = new org.apache.axis.description.OperationDesc();
- oper.setName("search");
- oper.addParameter(new javax.xml.namespace.QName("", "s"),
- new javax.xml.namespace.QName("simple.objects.vamsas",
- "Sequence"), vamsas.objects.simple.Sequence.class,
- org.apache.axis.description.ParameterDesc.IN, false, false);
- oper.addParameter(new javax.xml.namespace.QName("", "database"),
- new javax.xml.namespace.QName(
- "http://www.w3.org/2001/XMLSchema", "string"),
- java.lang.String.class,
- org.apache.axis.description.ParameterDesc.IN, false, false);
- oper.setReturnType(new javax.xml.namespace.QName(
- "simple.objects.vamsas", "WsJobId"));
- oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
- oper.setReturnQName(new javax.xml.namespace.QName("", "searchReturn"));
- oper.setStyle(org.apache.axis.constants.Style.RPC);
- oper.setUse(org.apache.axis.constants.Use.ENCODED);
- _operations[3] = oper;
-
- oper = new org.apache.axis.description.OperationDesc();
- oper.setName("cancel");
- oper.addParameter(new javax.xml.namespace.QName("", "jobId"),
- new javax.xml.namespace.QName(
- "http://www.w3.org/2001/XMLSchema", "string"),
- java.lang.String.class,
- org.apache.axis.description.ParameterDesc.IN, false, false);
- oper.setReturnType(new javax.xml.namespace.QName(
- "simple.objects.vamsas", "WsJobId"));
- oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
- oper.setReturnQName(new javax.xml.namespace.QName("", "cancelReturn"));
- oper.setStyle(org.apache.axis.constants.Style.RPC);
- oper.setUse(org.apache.axis.constants.Use.ENCODED);
- _operations[4] = oper;
-
- }
-
- public SeqSearchServiceSoapBindingStub() throws org.apache.axis.AxisFault
- {
- this(null);
- }
-
- public SeqSearchServiceSoapBindingStub(java.net.URL endpointURL,
- javax.xml.rpc.Service service) throws org.apache.axis.AxisFault
- {
- this(service);
- super.cachedEndpoint = endpointURL;
- }
-
- public SeqSearchServiceSoapBindingStub(javax.xml.rpc.Service service)
- throws org.apache.axis.AxisFault
- {
- if (service == null)
- {
- super.service = new org.apache.axis.client.Service();
- }
- else
- {
- super.service = service;
- }
- java.lang.Class cls;
- javax.xml.namespace.QName qName;
- java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
- java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
- java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
- java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
- java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
- java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
- java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
- java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
- java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
- java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
- qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Result");
- cachedSerQNames.add(qName);
- cls = vamsas.objects.simple.Result.class;
- cachedSerClasses.add(cls);
- cachedSerFactories.add(beansf);
- cachedDeserFactories.add(beandf);
-
- qName = new javax.xml.namespace.QName("simple.objects.vamsas",
- "WsJobId");
- cachedSerQNames.add(qName);
- cls = vamsas.objects.simple.WsJobId.class;
- cachedSerClasses.add(cls);
- cachedSerFactories.add(beansf);
- cachedDeserFactories.add(beandf);
-
- qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
- "Object");
- cachedSerQNames.add(qName);
- cls = vamsas.objects.simple.Object.class;
- cachedSerClasses.add(cls);
- cachedSerFactories.add(beansf);
- cachedDeserFactories.add(beandf);
-
- qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_xsd_string");
- cachedSerQNames.add(qName);
- cls = java.lang.String[].class;
- cachedSerClasses.add(cls);
- cachedSerFactories.add(arraysf);
- cachedDeserFactories.add(arraydf);
-
- qName = new javax.xml.namespace.QName("simple.objects.vamsas",
- "Alignment");
- cachedSerQNames.add(qName);
- cls = vamsas.objects.simple.Alignment.class;
- cachedSerClasses.add(cls);
- cachedSerFactories.add(beansf);
- cachedDeserFactories.add(beandf);
-
- qName = new javax.xml.namespace.QName("simple.objects.vamsas",
- "Sequence");
- cachedSerQNames.add(qName);
- cls = vamsas.objects.simple.Sequence.class;
- cachedSerClasses.add(cls);
- cachedSerFactories.add(beansf);
- cachedDeserFactories.add(beandf);
-
- qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_tns1_Sequence");
- cachedSerQNames.add(qName);
- cls = vamsas.objects.simple.Sequence[].class;
- cachedSerClasses.add(cls);
- cachedSerFactories.add(arraysf);
- cachedDeserFactories.add(arraydf);
-
- qName = new javax.xml.namespace.QName("simple.objects.vamsas",
- "SeqSearchResult");
- cachedSerQNames.add(qName);
- cls = vamsas.objects.simple.SeqSearchResult.class;
- cachedSerClasses.add(cls);
- cachedSerFactories.add(beansf);
- cachedDeserFactories.add(beandf);
-
- qName = new javax.xml.namespace.QName("simple.objects.vamsas",
- "SequenceSet");
- cachedSerQNames.add(qName);
- cls = vamsas.objects.simple.SequenceSet.class;
- cachedSerClasses.add(cls);
- cachedSerFactories.add(beansf);
- cachedDeserFactories.add(beandf);
-
- }
-
- protected org.apache.axis.client.Call createCall()
- throws java.rmi.RemoteException
- {
- try
- {
- org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service
- .createCall();
- if (super.maintainSessionSet)
- {
- _call.setMaintainSession(super.maintainSession);
- }
- if (super.cachedUsername != null)
- {
- _call.setUsername(super.cachedUsername);
- }
- if (super.cachedPassword != null)
- {
- _call.setPassword(super.cachedPassword);
- }
- if (super.cachedEndpoint != null)
- {
- _call.setTargetEndpointAddress(super.cachedEndpoint);
- }
- if (super.cachedTimeout != null)
- {
- _call.setTimeout(super.cachedTimeout);
- }
- if (super.cachedPortName != null)
- {
- _call.setPortName(super.cachedPortName);
- }
- java.util.Enumeration keys = super.cachedProperties.keys();
- while (keys.hasMoreElements())
- {
- java.lang.String key = (java.lang.String) keys.nextElement();
- _call.setProperty(key, super.cachedProperties.get(key));
- }
- // All the type mapping information is registered
- // when the first call is made.
- // The type mapping information is actually registered in
- // the TypeMappingRegistry of the service, which
- // is the reason why registration is only needed for the first call.
- synchronized (this)
- {
- if (firstCall())
- {
- // must set encoding style before registering serializers
- _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
- _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
- for (int i = 0; i < cachedSerFactories.size(); ++i)
- {
- java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
- javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames
- .get(i);
- java.lang.Class sf = (java.lang.Class) cachedSerFactories
- .get(i);
- java.lang.Class df = (java.lang.Class) cachedDeserFactories
- .get(i);
- _call.registerTypeMapping(cls, qName, sf, df, false);
- }
- }
- }
- return _call;
- } catch (java.lang.Throwable _t)
- {
- throw new org.apache.axis.AxisFault(
- "Failure trying to get the Call object", _t);
- }
- }
-
- public java.lang.String getDatabase() throws java.rmi.RemoteException
- {
- if (super.cachedEndpoint == null)
- {
- throw new org.apache.axis.NoEndPointException();
- }
- org.apache.axis.client.Call _call = createCall();
- _call.setOperation(_operations[0]);
- _call.setUseSOAPAction(true);
- _call.setSOAPActionURI("");
- _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
- _call.setOperationName(new javax.xml.namespace.QName("vamsas",
- "getDatabase"));
-
- setRequestHeaders(_call);
- setAttachments(_call);
- java.lang.Object _resp = _call.invoke(new java.lang.Object[]
- {});
-
- if (_resp instanceof java.rmi.RemoteException)
- {
- throw (java.rmi.RemoteException) _resp;
- }
- else
- {
- extractAttachments(_call);
- try
- {
- return (java.lang.String) _resp;
- } catch (java.lang.Exception _exception)
- {
- return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(
- _resp, java.lang.String.class);
- }
- }
- }
-
- public vamsas.objects.simple.SeqSearchResult getResult(
- java.lang.String job_id) throws java.rmi.RemoteException
- {
- if (super.cachedEndpoint == null)
- {
- throw new org.apache.axis.NoEndPointException();
- }
- org.apache.axis.client.Call _call = createCall();
- _call.setOperation(_operations[1]);
- _call.setUseSOAPAction(true);
- _call.setSOAPActionURI("");
- _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
- _call.setOperationName(new javax.xml.namespace.QName("vamsas",
- "getResult"));
-
- setRequestHeaders(_call);
- setAttachments(_call);
- java.lang.Object _resp = _call.invoke(new java.lang.Object[]
- { job_id });
-
- if (_resp instanceof java.rmi.RemoteException)
- {
- throw (java.rmi.RemoteException) _resp;
- }
- else
- {
- extractAttachments(_call);
- try
- {
- return (vamsas.objects.simple.SeqSearchResult) _resp;
- } catch (java.lang.Exception _exception)
- {
- return (vamsas.objects.simple.SeqSearchResult) org.apache.axis.utils.JavaUtils
- .convert(_resp, vamsas.objects.simple.SeqSearchResult.class);
- }
- }
- }
-
- public vamsas.objects.simple.WsJobId psearch(
- vamsas.objects.simple.Alignment al, java.lang.String database)
- throws java.rmi.RemoteException
- {
- if (super.cachedEndpoint == null)
- {
- throw new org.apache.axis.NoEndPointException();
- }
- org.apache.axis.client.Call _call = createCall();
- _call.setOperation(_operations[2]);
- _call.setUseSOAPAction(true);
- _call.setSOAPActionURI("");
- _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
- _call.setOperationName(new javax.xml.namespace.QName("vamsas",
- "psearch"));
-
- setRequestHeaders(_call);
- setAttachments(_call);
- java.lang.Object _resp = _call.invoke(new java.lang.Object[]
- { al, database });
-
- if (_resp instanceof java.rmi.RemoteException)
- {
- throw (java.rmi.RemoteException) _resp;
- }
- else
- {
- extractAttachments(_call);
- try
- {
- return (vamsas.objects.simple.WsJobId) _resp;
- } catch (java.lang.Exception _exception)
- {
- return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
- .convert(_resp, vamsas.objects.simple.WsJobId.class);
- }
- }
- }
-
- public vamsas.objects.simple.WsJobId search(
- vamsas.objects.simple.Sequence s, java.lang.String database)
- throws java.rmi.RemoteException
- {
- if (super.cachedEndpoint == null)
- {
- throw new org.apache.axis.NoEndPointException();
- }
- org.apache.axis.client.Call _call = createCall();
- _call.setOperation(_operations[3]);
- _call.setUseSOAPAction(true);
- _call.setSOAPActionURI("");
- _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
- _call.setOperationName(new javax.xml.namespace.QName("vamsas", "search"));
-
- setRequestHeaders(_call);
- setAttachments(_call);
- java.lang.Object _resp = _call.invoke(new java.lang.Object[]
- { s, database });
-
- if (_resp instanceof java.rmi.RemoteException)
- {
- throw (java.rmi.RemoteException) _resp;
- }
- else
- {
- extractAttachments(_call);
- try
- {
- return (vamsas.objects.simple.WsJobId) _resp;
- } catch (java.lang.Exception _exception)
- {
- return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
- .convert(_resp, vamsas.objects.simple.WsJobId.class);
- }
- }
- }
-
- public vamsas.objects.simple.WsJobId cancel(java.lang.String jobId)
- throws java.rmi.RemoteException
- {
- if (super.cachedEndpoint == null)
- {
- throw new org.apache.axis.NoEndPointException();
- }
- org.apache.axis.client.Call _call = createCall();
- _call.setOperation(_operations[4]);
- _call.setUseSOAPAction(true);
- _call.setSOAPActionURI("");
- _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
- _call.setOperationName(new javax.xml.namespace.QName("vamsas", "cancel"));
-
- setRequestHeaders(_call);
- setAttachments(_call);
- java.lang.Object _resp = _call.invoke(new java.lang.Object[]
- { jobId });
-
- if (_resp instanceof java.rmi.RemoteException)
- {
- throw (java.rmi.RemoteException) _resp;
- }
- else
- {
- extractAttachments(_call);
- try
- {
- return (vamsas.objects.simple.WsJobId) _resp;
- } catch (java.lang.Exception _exception)
- {
- return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
- .convert(_resp, vamsas.objects.simple.WsJobId.class);
- }
- }
- }
-
-}
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package ext.vamsas;
+
+public class SeqSearchServiceSoapBindingStub extends
+ org.apache.axis.client.Stub implements ext.vamsas.SeqSearchI
+{
+ private java.util.Vector cachedSerClasses = new java.util.Vector();
+
+ private java.util.Vector cachedSerQNames = new java.util.Vector();
+
+ private java.util.Vector cachedSerFactories = new java.util.Vector();
+
+ private java.util.Vector cachedDeserFactories = new java.util.Vector();
+
+ static org.apache.axis.description.OperationDesc[] _operations;
+
+ static
+ {
+ _operations = new org.apache.axis.description.OperationDesc[5];
+ _initOperationDesc1();
+ }
+
+ private static void _initOperationDesc1()
+ {
+ org.apache.axis.description.OperationDesc oper;
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("getDatabase");
+ oper.setReturnType(new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"));
+ oper.setReturnClass(java.lang.String.class);
+ oper.setReturnQName(new javax.xml.namespace.QName("",
+ "getDatabaseReturn"));
+ oper.setStyle(org.apache.axis.constants.Style.RPC);
+ oper.setUse(org.apache.axis.constants.Use.ENCODED);
+ _operations[0] = oper;
+
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("getResult");
+ oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
+ new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName(
+ "simple.objects.vamsas", "SeqSearchResult"));
+ oper.setReturnClass(vamsas.objects.simple.SeqSearchResult.class);
+ oper.setReturnQName(new javax.xml.namespace.QName("", "getResultReturn"));
+ oper.setStyle(org.apache.axis.constants.Style.RPC);
+ oper.setUse(org.apache.axis.constants.Use.ENCODED);
+ _operations[1] = oper;
+
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("psearch");
+ oper.addParameter(new javax.xml.namespace.QName("", "al"),
+ new javax.xml.namespace.QName("simple.objects.vamsas",
+ "Alignment"), vamsas.objects.simple.Alignment.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.addParameter(new javax.xml.namespace.QName("", "database"),
+ new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName(
+ "simple.objects.vamsas", "WsJobId"));
+ oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
+ oper.setReturnQName(new javax.xml.namespace.QName("", "psearchReturn"));
+ oper.setStyle(org.apache.axis.constants.Style.RPC);
+ oper.setUse(org.apache.axis.constants.Use.ENCODED);
+ _operations[2] = oper;
+
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("search");
+ oper.addParameter(new javax.xml.namespace.QName("", "s"),
+ new javax.xml.namespace.QName("simple.objects.vamsas",
+ "Sequence"), vamsas.objects.simple.Sequence.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.addParameter(new javax.xml.namespace.QName("", "database"),
+ new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName(
+ "simple.objects.vamsas", "WsJobId"));
+ oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
+ oper.setReturnQName(new javax.xml.namespace.QName("", "searchReturn"));
+ oper.setStyle(org.apache.axis.constants.Style.RPC);
+ oper.setUse(org.apache.axis.constants.Use.ENCODED);
+ _operations[3] = oper;
+
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("cancel");
+ oper.addParameter(new javax.xml.namespace.QName("", "jobId"),
+ new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName(
+ "simple.objects.vamsas", "WsJobId"));
+ oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
+ oper.setReturnQName(new javax.xml.namespace.QName("", "cancelReturn"));
+ oper.setStyle(org.apache.axis.constants.Style.RPC);
+ oper.setUse(org.apache.axis.constants.Use.ENCODED);
+ _operations[4] = oper;
+
+ }
+
+ public SeqSearchServiceSoapBindingStub() throws org.apache.axis.AxisFault
+ {
+ this(null);
+ }
+
+ public SeqSearchServiceSoapBindingStub(java.net.URL endpointURL,
+ javax.xml.rpc.Service service) throws org.apache.axis.AxisFault
+ {
+ this(service);
+ super.cachedEndpoint = endpointURL;
+ }
+
+ public SeqSearchServiceSoapBindingStub(javax.xml.rpc.Service service)
+ throws org.apache.axis.AxisFault
+ {
+ if (service == null)
+ {
+ super.service = new org.apache.axis.client.Service();
+ }
+ else
+ {
+ super.service = service;
+ }
+ java.lang.Class cls;
+ javax.xml.namespace.QName qName;
+ java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
+ java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
+ java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
+ java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
+ java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
+ java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
+ java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
+ java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
+ java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
+ java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
+ qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Result");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.Result.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+ "WsJobId");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.WsJobId.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
+ "Object");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.Object.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_xsd_string");
+ cachedSerQNames.add(qName);
+ cls = java.lang.String[].class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(arraysf);
+ cachedDeserFactories.add(arraydf);
+
+ qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+ "Alignment");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.Alignment.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+ "Sequence");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.Sequence.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_tns1_Sequence");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.Sequence[].class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(arraysf);
+ cachedDeserFactories.add(arraydf);
+
+ qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+ "SeqSearchResult");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.SeqSearchResult.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+ "SequenceSet");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.SequenceSet.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ }
+
+ protected org.apache.axis.client.Call createCall()
+ throws java.rmi.RemoteException
+ {
+ try
+ {
+ org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service
+ .createCall();
+ if (super.maintainSessionSet)
+ {
+ _call.setMaintainSession(super.maintainSession);
+ }
+ if (super.cachedUsername != null)
+ {
+ _call.setUsername(super.cachedUsername);
+ }
+ if (super.cachedPassword != null)
+ {
+ _call.setPassword(super.cachedPassword);
+ }
+ if (super.cachedEndpoint != null)
+ {
+ _call.setTargetEndpointAddress(super.cachedEndpoint);
+ }
+ if (super.cachedTimeout != null)
+ {
+ _call.setTimeout(super.cachedTimeout);
+ }
+ if (super.cachedPortName != null)
+ {
+ _call.setPortName(super.cachedPortName);
+ }
+ java.util.Enumeration keys = super.cachedProperties.keys();
+ while (keys.hasMoreElements())
+ {
+ java.lang.String key = (java.lang.String) keys.nextElement();
+ _call.setProperty(key, super.cachedProperties.get(key));
+ }
+ // All the type mapping information is registered
+ // when the first call is made.
+ // The type mapping information is actually registered in
+ // the TypeMappingRegistry of the service, which
+ // is the reason why registration is only needed for the first call.
+ synchronized (this)
+ {
+ if (firstCall())
+ {
+ // must set encoding style before registering serializers
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
+ for (int i = 0; i < cachedSerFactories.size(); ++i)
+ {
+ java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
+ javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames
+ .get(i);
+ java.lang.Class sf = (java.lang.Class) cachedSerFactories
+ .get(i);
+ java.lang.Class df = (java.lang.Class) cachedDeserFactories
+ .get(i);
+ _call.registerTypeMapping(cls, qName, sf, df, false);
+ }
+ }
+ }
+ return _call;
+ } catch (java.lang.Throwable _t)
+ {
+ throw new org.apache.axis.AxisFault(
+ "Failure trying to get the Call object", _t);
+ }
+ }
+
+ public java.lang.String getDatabase() throws java.rmi.RemoteException
+ {
+ if (super.cachedEndpoint == null)
+ {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[0]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("");
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName("vamsas",
+ "getDatabase"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[]
+ {});
+
+ if (_resp instanceof java.rmi.RemoteException)
+ {
+ throw (java.rmi.RemoteException) _resp;
+ }
+ else
+ {
+ extractAttachments(_call);
+ try
+ {
+ return (java.lang.String) _resp;
+ } catch (java.lang.Exception _exception)
+ {
+ return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(
+ _resp, java.lang.String.class);
+ }
+ }
+ }
+
+ public vamsas.objects.simple.SeqSearchResult getResult(
+ java.lang.String job_id) throws java.rmi.RemoteException
+ {
+ if (super.cachedEndpoint == null)
+ {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[1]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("");
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName("vamsas",
+ "getResult"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[]
+ { job_id });
+
+ if (_resp instanceof java.rmi.RemoteException)
+ {
+ throw (java.rmi.RemoteException) _resp;
+ }
+ else
+ {
+ extractAttachments(_call);
+ try
+ {
+ return (vamsas.objects.simple.SeqSearchResult) _resp;
+ } catch (java.lang.Exception _exception)
+ {
+ return (vamsas.objects.simple.SeqSearchResult) org.apache.axis.utils.JavaUtils
+ .convert(_resp, vamsas.objects.simple.SeqSearchResult.class);
+ }
+ }
+ }
+
+ public vamsas.objects.simple.WsJobId psearch(
+ vamsas.objects.simple.Alignment al, java.lang.String database)
+ throws java.rmi.RemoteException
+ {
+ if (super.cachedEndpoint == null)
+ {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[2]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("");
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName("vamsas",
+ "psearch"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[]
+ { al, database });
+
+ if (_resp instanceof java.rmi.RemoteException)
+ {
+ throw (java.rmi.RemoteException) _resp;
+ }
+ else
+ {
+ extractAttachments(_call);
+ try
+ {
+ return (vamsas.objects.simple.WsJobId) _resp;
+ } catch (java.lang.Exception _exception)
+ {
+ return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
+ .convert(_resp, vamsas.objects.simple.WsJobId.class);
+ }
+ }
+ }
+
+ public vamsas.objects.simple.WsJobId search(
+ vamsas.objects.simple.Sequence s, java.lang.String database)
+ throws java.rmi.RemoteException
+ {
+ if (super.cachedEndpoint == null)
+ {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[3]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("");
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName("vamsas", "search"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[]
+ { s, database });
+
+ if (_resp instanceof java.rmi.RemoteException)
+ {
+ throw (java.rmi.RemoteException) _resp;
+ }
+ else
+ {
+ extractAttachments(_call);
+ try
+ {
+ return (vamsas.objects.simple.WsJobId) _resp;
+ } catch (java.lang.Exception _exception)
+ {
+ return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
+ .convert(_resp, vamsas.objects.simple.WsJobId.class);
+ }
+ }
+ }
+
+ public vamsas.objects.simple.WsJobId cancel(java.lang.String jobId)
+ throws java.rmi.RemoteException
+ {
+ if (super.cachedEndpoint == null)
+ {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[4]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("");
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName("vamsas", "cancel"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[]
+ { jobId });
+
+ if (_resp instanceof java.rmi.RemoteException)
+ {
+ throw (java.rmi.RemoteException) _resp;
+ }
+ else
+ {
+ extractAttachments(_call);
+ try
+ {
+ return (vamsas.objects.simple.WsJobId) _resp;
+ } catch (java.lang.Exception _exception)
+ {
+ return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
+ .convert(_resp, vamsas.objects.simple.WsJobId.class);
+ }
+ }
+ }
+
+}