X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fanalysis%2FAlignSeq.java;h=d05aa9659143c58f8275ddeeba0d370b75c5fa10;hb=5a98fbf31c418758a11bbf8f54d5def7e509bb31;hp=e7fed8d4f19daa5dece20ffb84ab1bc391ff033d;hpb=d5f22defdce0bf4d162f976027cdbf6c2c43d036;p=jalview.git

diff --git a/src/jalview/analysis/AlignSeq.java b/src/jalview/analysis/AlignSeq.java
index e7fed8d..d05aa96 100755
--- a/src/jalview/analysis/AlignSeq.java
+++ b/src/jalview/analysis/AlignSeq.java
@@ -1113,7 +1113,7 @@ public class AlignSeq
               if (removeOldAnnots) {
                 annotations.remove(ap);
               } else {
-                AlignmentAnnotation alan = annotations.get(ap);
+                AlignmentAnnotation alan = annotations.remove(ap);
                 alan.liftOver(sq, sp2sq);
                 alan.setSequenceRef(sq);
                 sq.addAlignmentAnnotation(alan);