X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fanalysis%2FPCA.java;h=eaea7bf9471363c11d87f739fd31f10872b6bb40;hb=05d2ce87440717d47ba3dc6ef293e25e4543fdd1;hp=06a139bb6df27db1c145b93309e3dff54063298d;hpb=8b844f70b97629d597be49cb6ac0d83c8da007c9;p=jalview.git

diff --git a/src/jalview/analysis/PCA.java b/src/jalview/analysis/PCA.java
index 06a139b..eaea7bf 100755
--- a/src/jalview/analysis/PCA.java
+++ b/src/jalview/analysis/PCA.java
@@ -144,8 +144,8 @@ public class PCA implements Runnable
     // System.out.println("Created array");
     // printMemory(rt);
     // System.out.println(" --- Original matrix ---- ");
-    m = new Matrix(seqmat, count, bs[0].getDBinary().length);
-    m2 = new Matrix(seqmat2, count, bs2[0].getDBinary().length);
+    m = new Matrix(seqmat);
+    m2 = new Matrix(seqmat2);
 
   }
 
@@ -252,15 +252,18 @@ public class PCA implements Runnable
   /**
    * DOCUMENT ME!
    */
+  @Override
   public void run()
   {
     PrintStream ps = new PrintStream(System.out)
     {
+      @Override
       public void print(String x)
       {
         details.append(x);
       }
 
+      @Override
       public void println()
       {
         details.append("\n");