X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fanalysis%2FSequenceIdMatcher.java;h=3ec162d440b8c426ff052b9bc21f9ca7d5c6ad10;hb=8f08ed712138cea8987594a62b6053a0bfdba327;hp=3d4cbe7963fb04cb003e543de34943c0441fa923;hpb=3d0101179759ef157b088ea135423cd909512d9f;p=jalview.git

diff --git a/src/jalview/analysis/SequenceIdMatcher.java b/src/jalview/analysis/SequenceIdMatcher.java
index 3d4cbe7..3ec162d 100755
--- a/src/jalview/analysis/SequenceIdMatcher.java
+++ b/src/jalview/analysis/SequenceIdMatcher.java
@@ -20,6 +20,8 @@
  */
 package jalview.analysis;
 
+import java.util.Locale;
+
 import jalview.datamodel.DBRefEntry;
 import jalview.datamodel.SequenceI;
 
@@ -74,13 +76,13 @@ public class SequenceIdMatcher
       dbseq = dbseq.getDatasetSequence();
     }
     // add in any interesting identifiers
-    if (dbseq.getDBRefs() != null)
+    List<DBRefEntry> dbr = dbseq.getDBRefs(); 
+    if (dbr != null)
     {
-      DBRefEntry dbr[] = dbseq.getDBRefs();
       SeqIdName sid = null;
-      for (int r = 0; r < dbr.length; r++)
+      for (int r = 0, nr = dbr.size(); r < nr; r++)
       {
-        sid = new SeqIdName(dbr[r].getAccessionId());
+        sid = new SeqIdName(dbr.get(r).getAccessionId());
         if (!names.containsKey(sid))
         {
           names.put(sid, seq);
@@ -289,7 +291,7 @@ public class SequenceIdMatcher
     {
       if (s != null)
       {
-        id = s.toLowerCase();
+        id = s.toLowerCase(Locale.ROOT);
       }
       else
       {
@@ -319,7 +321,7 @@ public class SequenceIdMatcher
       {
         if (s instanceof String)
         {
-          return this.stringequals(((String) s).toLowerCase());
+          return this.stringequals(((String) s).toLowerCase(Locale.ROOT));
         }
       }