X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fanalysis%2Fscoremodels%2FScoreMatrix.java;h=aa841ace85ddcc45cea2c9598a0188e9d405618d;hb=6ca8a32d88328b8f2162512f41c657c87e131045;hp=b206339805cf4d1f026c15eb34f3987a21a543b9;hpb=d90895bf6eed41ff1b2d413306afae3cac458756;p=jalview.git

diff --git a/src/jalview/analysis/scoremodels/ScoreMatrix.java b/src/jalview/analysis/scoremodels/ScoreMatrix.java
index b206339..aa841ac 100644
--- a/src/jalview/analysis/scoremodels/ScoreMatrix.java
+++ b/src/jalview/analysis/scoremodels/ScoreMatrix.java
@@ -331,12 +331,12 @@ public class ScoreMatrix extends SimilarityScoreModel
   {
     if (c >= symbolIndex.length)
     {
-      System.err.println(String.format(BAD_ASCII_ERROR, c));
+      jalview.bin.Console.errPrintln(String.format(BAD_ASCII_ERROR, c));
       return 0;
     }
     if (d >= symbolIndex.length)
     {
-      System.err.println(String.format(BAD_ASCII_ERROR, d));
+      jalview.bin.Console.errPrintln(String.format(BAD_ASCII_ERROR, d));
       return 0;
     }