X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fanalysis%2Fscoremodels%2FSimilarityParams.java;h=e5751ca6e61d6aac1a3eb1b7a3ccef14820d8689;hb=3f62ab98313f836c9e0cdec277e2ec9a0c194801;hp=35e3b9cf8c27cbf47501ce3e00b5a4dea6625820;hpb=693e17575680c94d9bdc5797faa0b328bb6f7c05;p=jalview.git diff --git a/src/jalview/analysis/scoremodels/SimilarityParams.java b/src/jalview/analysis/scoremodels/SimilarityParams.java index 35e3b9c..e5751ca 100644 --- a/src/jalview/analysis/scoremodels/SimilarityParams.java +++ b/src/jalview/analysis/scoremodels/SimilarityParams.java @@ -2,6 +2,18 @@ package jalview.analysis.scoremodels; import jalview.api.analysis.SimilarityParamsI; +/** + * A class to hold parameters that configure the pairwise similarity + * calculation. Based on the paper + * + *
+ * Quantification of the variation in percentage identity for protein sequence alignments + * Raghava, GP and Barton, GJ + * BMC Bioinformatics. 2006 Sep 19;7:415 + *+ * + * @see https://www.ncbi.nlm.nih.gov/pubmed/16984632 + */ public class SimilarityParams implements SimilarityParamsI { /**