X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fapi%2FAlignViewControllerI.java;h=3e689d1ad1fed2ed7ff85c1b8e16994be1b42a8d;hb=refs%2Fheads%2Fspike%2FJAL-4047%2FJAL-4048_columns_in_sequenceID;hp=a7ec69e2480d835675999aeb540db278410744f6;hpb=7d67fb613ec026dc9a265e351e7fab542e3f1d61;p=jalview.git

diff --git a/src/jalview/api/AlignViewControllerI.java b/src/jalview/api/AlignViewControllerI.java
index a7ec69e..3e689d1 100644
--- a/src/jalview/api/AlignViewControllerI.java
+++ b/src/jalview/api/AlignViewControllerI.java
@@ -20,10 +20,10 @@
  */
 package jalview.api;
 
-import jalview.io.DataSourceType;
-
 import java.util.List;
 
+import jalview.io.DataSourceType;
+
 /**
  * prototype abstract controller for a Jalview alignment view
  * 
@@ -96,7 +96,7 @@ public interface AlignViewControllerI
    * @return true if parsing resulted in something being imported to the view or
    *         dataset
    */
-  public boolean parseFeaturesFile(String file, DataSourceType sourceType,
+  public boolean parseFeaturesFile(Object file, DataSourceType sourceType,
           boolean relaxedIdMatching);
 
   /**
@@ -111,4 +111,12 @@ public interface AlignViewControllerI
   boolean markHighlightedColumns(boolean invert, boolean extendCurrent,
           boolean toggle);
 
+  /**
+   * copies each distinct highlighted region on the current view as a new
+   * sequence on the clipboard
+   * 
+   * @return
+   */
+  boolean copyHighlightedRegionsToClipboard();
+
 }