X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fapi%2FAlignmentViewPanel.java;h=0b1ca219421cbae59acba8e959675d0cb49355e6;hb=155a17a423e980849fd4dc5f857da1a72b0010b9;hp=70bb3d65749d7a91ad59631475bd1521851d57ad;hpb=06a78ad135ffd7a9d4bec8164153bedaff0f0ff3;p=jalview.git
diff --git a/src/jalview/api/AlignmentViewPanel.java b/src/jalview/api/AlignmentViewPanel.java
index 70bb3d6..0b1ca21 100644
--- a/src/jalview/api/AlignmentViewPanel.java
+++ b/src/jalview/api/AlignmentViewPanel.java
@@ -1,21 +1,23 @@
-/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
- *
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
* This file is part of Jalview.
- *
+ *
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
- *******************************************************************************/
-
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.api;
import jalview.datamodel.AlignmentI;
@@ -23,23 +25,42 @@ import jalview.structure.StructureSelectionManager;
/**
* abstract interface implemented by alignment panels holding an alignment view
+ *
* @author JimP
- *
+ *
*/
public interface AlignmentViewPanel extends OOMHandlerI
{
+ AlignViewportI getAlignViewport();
+
AlignmentI getAlignment();
+
StructureSelectionManager getStructureSelectionManager();
+
/**
* repaint the alignment view after a datamodel update.
- * @param updateOverview - if true, the overview panel will also be updated and repainted
+ *
+ * @param updateOverview
+ * - if true, the overview panel will also be updated and repainted
+ * @param updateStructures
+ * - if true then any linked structure views will also be updated
*/
-
- void paintAlignment(boolean updateOverview);
+ void paintAlignment(boolean updateOverview, boolean updateStructures);
+
/**
- * automatically adjust annotation panel height for new annotation
- * whilst ensuring the alignment is still visible.
+ * automatically adjust annotation panel height for new annotation whilst
+ * ensuring the alignment is still visible.
*/
void adjustAnnotationHeight();
+
+ FeatureRenderer getFeatureRenderer();
+
+ FeatureRenderer cloneFeatureRenderer();
+
+ /**
+ *
+ * @return displayed name for the view
+ */
+ String getViewName();
}