X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fapi%2FFeatureRenderer.java;h=79911d9cd8063ed10ec4cf19f91df8879b02895e;hb=b6d073bedc4b28e1a0e5a3a899cfb0e32349087e;hp=2de27de7d304301878a71f4baea6b748cd62a08c;hpb=59d682209891099d46b960509907c79e3fb276fe;p=jalview.git
diff --git a/src/jalview/api/FeatureRenderer.java b/src/jalview/api/FeatureRenderer.java
index 2de27de..79911d9 100644
--- a/src/jalview/api/FeatureRenderer.java
+++ b/src/jalview/api/FeatureRenderer.java
@@ -1,25 +1,32 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.api;
+import jalview.datamodel.SequenceFeature;
import jalview.datamodel.SequenceI;
import java.awt.Color;
+import java.util.Hashtable;
+import java.util.List;
+import java.util.Map;
/**
* Abstract feature renderer interface
@@ -34,4 +41,38 @@ public interface FeatureRenderer
void featuresAdded();
+ Object getFeatureStyle(String ft);
+
+ void setColour(String ft, Object ggc);
+
+ AlignViewportI getViewport();
+
+ FeaturesDisplayedI getFeaturesDisplayed();
+
+ Map getFeatureColours();
+
+ void findAllFeatures(boolean newMadeVisible);
+
+ Map getDisplayedFeatureCols();
+
+ List getFeatureGroups();
+
+ List getGroups(boolean visible);
+
+ void setGroupVisibility(List toset, boolean visible);
+
+ void setGroupVisibility(String group, boolean visible);
+
+ List findFeaturesAtRes(SequenceI sequence, int res);
+
+ boolean isTransparencyAvailable();
+
+ String[] getDisplayedFeatureTypes();
+
+ String[] getDisplayedFeatureGroups();
+
+ void setAllVisible(List featureTypes);
+
+ void setVisible(String featureType);
+
}