X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fappletgui%2FAlignViewport.java;fp=src%2Fjalview%2Fappletgui%2FAlignViewport.java;h=2e76e1aece976095f614ed165759c257d98c1240;hb=8e1be43e250107a4d86898bd554cf03098fa5957;hp=9e82ae5cffaebe5f5e2c7a26d3af828ec30d5c4d;hpb=8b55eedb9d76a8c65b80f756c4412bf029906bf7;p=jalview.git

diff --git a/src/jalview/appletgui/AlignViewport.java b/src/jalview/appletgui/AlignViewport.java
index 9e82ae5..2e76e1a 100644
--- a/src/jalview/appletgui/AlignViewport.java
+++ b/src/jalview/appletgui/AlignViewport.java
@@ -32,6 +32,7 @@ import jalview.datamodel.SearchResultsI;
 import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceGroup;
 import jalview.datamodel.SequenceI;
+import jalview.schemes.CollectionColourScheme;
 import jalview.schemes.ColourSchemeProperty;
 import jalview.schemes.UserColourScheme;
 import jalview.structure.CommandListener;
@@ -208,8 +209,8 @@ public class AlignViewport extends AlignmentViewport implements
 
       if (colour != null)
       {
-        globalColourScheme = ColourSchemeProperty.getColourScheme(
-                alignment, colour);
+        globalColourScheme = new CollectionColourScheme(
+                ColourSchemeProperty.getColourScheme(alignment, colour));
         if (globalColourScheme != null)
         {
           globalColourScheme.setConsensus(hconsensus);
@@ -218,8 +219,9 @@ public class AlignViewport extends AlignmentViewport implements
 
       if (applet.getParameter("userDefinedColour") != null)
       {
-        globalColourScheme = new UserColourScheme(
-                applet.getParameter("userDefinedColour"));
+        globalColourScheme = new CollectionColourScheme(
+                new UserColourScheme(
+                        applet.getParameter("userDefinedColour")));
       }
     }
     initAutoAnnotation();