X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fappletgui%2FAlignViewport.java;fp=src%2Fjalview%2Fappletgui%2FAlignViewport.java;h=fc087c619e0dbb08ca536aaf3e26c1d1124df1ab;hb=4f094851cd2247ea2d982e7829a6f5b663042573;hp=29df968bace652f1f77c84c4074fc85fddd8ddf9;hpb=424f6f03e8fb5e40cceca09fc8ffd72b41e3a9e4;p=jalview.git

diff --git a/src/jalview/appletgui/AlignViewport.java b/src/jalview/appletgui/AlignViewport.java
index 29df968..fc087c6 100644
--- a/src/jalview/appletgui/AlignViewport.java
+++ b/src/jalview/appletgui/AlignViewport.java
@@ -209,17 +209,17 @@ public class AlignViewport extends AlignmentViewport implements
 
       if (colour != null)
       {
-        globalColourScheme = new ResidueShader(
+        residueShading = new ResidueShader(
                 ColourSchemeProperty.getColourScheme(alignment, colour));
-        if (globalColourScheme != null)
+        if (residueShading != null)
         {
-          globalColourScheme.setConsensus(hconsensus);
+          residueShading.setConsensus(hconsensus);
         }
       }
 
       if (applet.getParameter("userDefinedColour") != null)
       {
-        globalColourScheme = new ResidueShader(
+        residueShading = new ResidueShader(
                 new UserColourScheme(
                         applet.getParameter("userDefinedColour")));
       }