X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fappletgui%2FCutAndPasteTransfer.java;h=ea9a8aa04d9b8bc01006d0eb5802c204163b2ee2;hb=7310056093101fd093d53eabb83ab12174fe6255;hp=f8c3756b2f3d6aff93c20663aec017846aaecfcf;hpb=8da7acff9214ddaf0e6d28e76219ab51bd38e62d;p=jalview.git

diff --git a/src/jalview/appletgui/CutAndPasteTransfer.java b/src/jalview/appletgui/CutAndPasteTransfer.java
index f8c3756..ea9a8aa 100755
--- a/src/jalview/appletgui/CutAndPasteTransfer.java
+++ b/src/jalview/appletgui/CutAndPasteTransfer.java
@@ -24,15 +24,23 @@ import java.awt.event.*;
 
 import jalview.datamodel.*;
 import jalview.io.*;
-import jalview.jbappletgui.*;
 
-public class CutAndPasteTransfer
-    extends GCutAndPasteTransfer
+public class CutAndPasteTransfer extends Panel
 {
   jalview.bin.JalviewLite applet;
+
+  boolean pdbImport = false;
+  Sequence seq;
+  SeqCanvas seqcanvas;
+
   public CutAndPasteTransfer(boolean forImport, jalview.bin.JalviewLite mainApplet)
   {
-    super();
+    try {
+        jbInit();
+    } catch (Exception e) {
+        e.printStackTrace();
+    }
+
     applet = mainApplet;
 
     if (!forImport)
@@ -41,6 +49,14 @@ public class CutAndPasteTransfer
     }
   }
 
+  public void setPDBImport(Sequence seq, SeqCanvas seqcanvas)
+  {
+    this.seq = seq;
+    this.seqcanvas = seqcanvas;
+    pdbImport = true;
+  }
+
+
   public String getText()
   {
     return textarea.getText();
@@ -68,31 +84,72 @@ public class CutAndPasteTransfer
           +warning);
 
       textarea.setCaretPosition(text.length());
-      return;
     }
 
-    SequenceI[] sequences = null;
+    if(pdbImport)
+    {
+      new MCview.AppletPDBViewer(text, "Paste", seq, seqcanvas);
+    }
+    else
+    {
+      SequenceI[] sequences = null;
 
-    String format = IdentifyFile.Identify(text, "Paste");
-    sequences = FormatAdapter.readFile(text, "Paste", format);
+      String format = IdentifyFile.Identify(text, "Paste");
+      sequences = new AppletFormatAdapter().readFile(text, "Paste", format);
 
-    if (sequences != null)
-    {
-      AlignFrame af = new AlignFrame(new Alignment(sequences), applet);
-      jalview.bin.JalviewLite.addFrame(af, "Cut & Paste input - " + format,
-                                       AlignFrame.NEW_WINDOW_WIDTH,
-                                       AlignFrame.NEW_WINDOW_HEIGHT);
-      af.statusBar.setText("Successfully pasted alignment file");
+      if (sequences != null)
+      {
+        AlignFrame af = new AlignFrame(new Alignment(sequences), applet,
+                                       "Cut & Paste input - " + format);
+        af.statusBar.setText("Successfully pasted alignment file");
+      }
     }
 
-    Frame frame = (Frame)this.getParent();
-    frame.setVisible(false);
+    ((Frame)this.getParent()).setVisible(false);
   }
 
   protected void cancel_actionPerformed(ActionEvent e)
   {
-    Frame frame = (Frame)this.getParent();
-    frame.setVisible(false);
+    ((Frame)this.getParent()).setVisible(false);
+  }
+
+  protected TextArea textarea = new TextArea();
+  Button ok = new Button();
+  Button cancel = new Button();
+  protected Panel buttonPanel = new Panel();
+  BorderLayout borderLayout1 = new BorderLayout();
+
+
+  private void jbInit() throws Exception {
+      textarea.setFont(new java.awt.Font("Monospaced", Font.PLAIN, 10));
+      textarea.setText("Paste your alignment file here");
+      textarea.addMouseListener(new java.awt.event.MouseAdapter() {
+              public void mousePressed(MouseEvent e) {
+                  textarea_mousePressed(e);
+              }
+          });
+      this.setLayout(borderLayout1);
+      ok.setLabel("OK");
+      ok.addActionListener(new java.awt.event.ActionListener() {
+              public void actionPerformed(ActionEvent e) {
+                  ok_actionPerformed(e);
+              }
+          });
+      cancel.setLabel("Cancel");
+      cancel.addActionListener(new java.awt.event.ActionListener() {
+              public void actionPerformed(ActionEvent e) {
+                  cancel_actionPerformed(e);
+              }
+          });
+      this.add(buttonPanel, BorderLayout.SOUTH);
+      buttonPanel.add(ok, null);
+      buttonPanel.add(cancel, null);
+      this.add(textarea, java.awt.BorderLayout.CENTER);
   }
 
+  void textarea_mousePressed(MouseEvent e) {
+      if (textarea.getText().startsWith("Paste your")) {
+          textarea.setText("");
+      }
+  }
 }