X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fappletgui%2FFeatureSettings.java;h=7dc11c1d6bac662f25fa0e77db2e8cc8079c4a7c;hb=94e19634c669879ab63bbb82d5489c200cdb18f8;hp=9e40b1a127d7fc03e12ad4dd6e5e2736f9e9161e;hpb=7bc226b58110fa26d9dbd3f0c78095d06909ffc3;p=jalview.git

diff --git a/src/jalview/appletgui/FeatureSettings.java b/src/jalview/appletgui/FeatureSettings.java
index 9e40b1a..7dc11c1 100755
--- a/src/jalview/appletgui/FeatureSettings.java
+++ b/src/jalview/appletgui/FeatureSettings.java
@@ -381,11 +381,8 @@ public class FeatureSettings
     System.arraycopy(tmp, 0, data, 0, tmpSize);
 
     fr.setFeaturePriority(data);
-    ap.seqPanel.seqCanvas.repaint();
-    if (ap.overviewPanel != null)
-    {
-      ap.overviewPanel.updateOverviewImage();
-    }
+
+    ap.paintAlignment(true);
   }
 
   MyCheckbox selectedCheck;
@@ -476,7 +473,7 @@ public class FeatureSettings
     fr.setColour(feature, col);
     featurePanel.removeAll();
     resetTable(false);
-    ap.repaint();
+    ap.paintAlignment(true);
   }
 
   public void mouseEntered(MouseEvent evt)