X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fbin%2FJalviewLite.java;h=311e48d7953c8c60845ed917a3bf3cf6bcff8b2f;hb=e9aa1cee679000405c5549829ee08e1c08b2ffd5;hp=cff698703f0ef73399bb9a2e7ac3e8f89bbca80f;hpb=8d5a12d996b49525f7c5b83f3cc280aeb7c3fda7;p=jalview.git

diff --git a/src/jalview/bin/JalviewLite.java b/src/jalview/bin/JalviewLite.java
index cff6987..311e48d 100644
--- a/src/jalview/bin/JalviewLite.java
+++ b/src/jalview/bin/JalviewLite.java
@@ -492,6 +492,8 @@ public class JalviewLite extends Applet implements
       boolean seqlimits = suffix.equalsIgnoreCase("true");
       if (alf.viewport.getSelectionGroup() != null)
       {
+        // JBPNote: getSelectionAsNewSequence behaviour has changed - this method now returns a full copy of sequence data
+        // TODO consider using getSequenceSelection instead here
         String reply = new AppletFormatAdapter().formatSequences(format,
                 new Alignment(alf.viewport.getSelectionAsNewSequence()),
                 seqlimits);