X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fbinding%2FAnnotationElement.java;h=e4aec318c88937edd816a9c6948176c5314d5da0;hb=e3cad17c5dba620dafc8459295ecc959cbe52938;hp=16c3dab0c9962bcb27acfc8d0846ac61df915a20;hpb=efc31b4a8d5cee63555586804a2b79c06bdb5a14;p=jalview.git diff --git a/src/jalview/binding/AnnotationElement.java b/src/jalview/binding/AnnotationElement.java index 16c3dab..e4aec31 100755 --- a/src/jalview/binding/AnnotationElement.java +++ b/src/jalview/binding/AnnotationElement.java @@ -1,36 +1,36 @@ /* - * This class was automatically generated with + * This class was automatically generated with * Castor 0.9.6, using an XML * Schema. * $Id$ */ -package jalview.binding; - -import org.exolab.castor.xml.MarshalException; -import org.exolab.castor.xml.Marshaller; -import org.exolab.castor.xml.Unmarshaller; -import org.exolab.castor.xml.ValidationException; -import org.xml.sax.ContentHandler; +package jalview.binding; + //---------------------------------/ + //- Imported classes and packages -/ //---------------------------------/ -//- Imported classes and packages -/ -//---------------------------------/ + import java.io.IOException; import java.io.Reader; import java.io.Serializable; import java.io.Writer; - +import org.exolab.castor.xml.MarshalException; +import org.exolab.castor.xml.Marshaller; +import org.exolab.castor.xml.Unmarshaller; +import org.exolab.castor.xml.ValidationException; +import org.xml.sax.ContentHandler; /** * Class AnnotationElement. - * + * * @version $Revision$ $Date$ */ -public class AnnotationElement implements java.io.Serializable -{ - //--------------------------/ - //- Class/Member Variables -/ +public class AnnotationElement implements java.io.Serializable { + + + //--------------------------/ + //- Class/Member Variables -/ //--------------------------/ /** @@ -68,276 +68,239 @@ public class AnnotationElement implements java.io.Serializable */ private boolean _has_value; + + //----------------/ + //- Constructors -/ //----------------/ - //- Constructors -/ - //----------------/ - public AnnotationElement() - { + + public AnnotationElement() { super(); - } + } //-- jalview.binding.AnnotationElement() + - //-- jalview.binding.AnnotationElement() + //-----------/ + //- Methods -/ //-----------/ /** - * DOCUMENT ME! + * Method deletePosition + * */ public void deletePosition() { - this._has_position = false; - } - - //-- void deletePosition() + this._has_position= false; + } //-- void deletePosition() /** * Method deleteValue - * + * */ public void deleteValue() { - this._has_value = false; - } - - //-- void deleteValue() + this._has_value= false; + } //-- void deleteValue() /** * Returns the value of field 'description'. - * + * * @return String * @return the value of field 'description'. */ public java.lang.String getDescription() { return this._description; - } - - //-- java.lang.String getDescription() + } //-- java.lang.String getDescription() /** * Returns the value of field 'displayCharacter'. - * + * * @return String * @return the value of field 'displayCharacter'. */ public java.lang.String getDisplayCharacter() { return this._displayCharacter; - } - - //-- java.lang.String getDisplayCharacter() + } //-- java.lang.String getDisplayCharacter() /** * Returns the value of field 'position'. - * + * * @return int * @return the value of field 'position'. */ public int getPosition() { return this._position; - } - - //-- int getPosition() + } //-- int getPosition() /** * Returns the value of field 'secondaryStructure'. - * + * * @return String * @return the value of field 'secondaryStructure'. */ public java.lang.String getSecondaryStructure() { return this._secondaryStructure; - } - - //-- java.lang.String getSecondaryStructure() + } //-- java.lang.String getSecondaryStructure() /** * Returns the value of field 'value'. - * + * * @return float * @return the value of field 'value'. */ public float getValue() { return this._value; - } - - //-- float getValue() + } //-- float getValue() /** * Method hasPosition - * - * - * + * + * + * * @return boolean */ public boolean hasPosition() { return this._has_position; - } - - //-- boolean hasPosition() + } //-- boolean hasPosition() /** * Method hasValue - * - * - * + * + * + * * @return boolean */ public boolean hasValue() { return this._has_value; - } - - //-- boolean hasValue() + } //-- boolean hasValue() /** * Method isValid - * - * - * + * + * + * * @return boolean */ public boolean isValid() { - try - { + try { validate(); } - catch (org.exolab.castor.xml.ValidationException vex) - { + catch (org.exolab.castor.xml.ValidationException vex) { return false; } - return true; - } - - //-- boolean isValid() + } //-- boolean isValid() /** * Method marshal - * - * - * + * + * + * * @param out */ public void marshal(java.io.Writer out) - throws org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException + throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { + Marshaller.marshal(this, out); - } - - //-- void marshal(java.io.Writer) + } //-- void marshal(java.io.Writer) /** * Method marshal - * - * - * + * + * + * * @param handler */ public void marshal(org.xml.sax.ContentHandler handler) - throws java.io.IOException, org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException + throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { + Marshaller.marshal(this, handler); - } - - //-- void marshal(org.xml.sax.ContentHandler) + } //-- void marshal(org.xml.sax.ContentHandler) /** * Sets the value of field 'description'. - * + * * @param description the value of field 'description'. */ public void setDescription(java.lang.String description) { this._description = description; - } - - //-- void setDescription(java.lang.String) + } //-- void setDescription(java.lang.String) /** * Sets the value of field 'displayCharacter'. - * + * * @param displayCharacter the value of field 'displayCharacter' */ public void setDisplayCharacter(java.lang.String displayCharacter) { this._displayCharacter = displayCharacter; - } - - //-- void setDisplayCharacter(java.lang.String) + } //-- void setDisplayCharacter(java.lang.String) /** * Sets the value of field 'position'. - * + * * @param position the value of field 'position'. */ public void setPosition(int position) { this._position = position; this._has_position = true; - } - - //-- void setPosition(int) + } //-- void setPosition(int) /** * Sets the value of field 'secondaryStructure'. - * + * * @param secondaryStructure the value of field * 'secondaryStructure'. */ public void setSecondaryStructure(java.lang.String secondaryStructure) { this._secondaryStructure = secondaryStructure; - } - - //-- void setSecondaryStructure(java.lang.String) + } //-- void setSecondaryStructure(java.lang.String) /** * Sets the value of field 'value'. - * + * * @param value the value of field 'value'. */ public void setValue(float value) { this._value = value; this._has_value = true; - } - - //-- void setValue(float) + } //-- void setValue(float) /** * Method unmarshal - * - * - * + * + * + * * @param reader * @return Object */ public static java.lang.Object unmarshal(java.io.Reader reader) - throws org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException + throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { - return (jalview.binding.AnnotationElement) Unmarshaller.unmarshal(jalview.binding.AnnotationElement.class, - reader); - } - - //-- java.lang.Object unmarshal(java.io.Reader) + return (jalview.binding.AnnotationElement) Unmarshaller.unmarshal(jalview.binding.AnnotationElement.class, reader); + } //-- java.lang.Object unmarshal(java.io.Reader) /** * Method validate - * + * */ - public void validate() throws org.exolab.castor.xml.ValidationException + public void validate() + throws org.exolab.castor.xml.ValidationException { org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); validator.validate(this); - } + } //-- void validate() - //-- void validate() }