X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fbinding%2FSequenceSet.java;h=3d81baeaf1d8a297d9323a37d95bef95fc2b3eab;hb=1b0f0d6c0a343e67453ed4f7e1ca3f9c2a7a6ff2;hp=eef0b9b5c404c81b3d2f8853d4eff4b1c6e58cf7;hpb=ab43013b7e357b84b4abade0dba949668dfb2a0e;p=jalview.git
diff --git a/src/jalview/binding/SequenceSet.java b/src/jalview/binding/SequenceSet.java
index eef0b9b..3d81bae 100644
--- a/src/jalview/binding/SequenceSet.java
+++ b/src/jalview/binding/SequenceSet.java
@@ -1,31 +1,16 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
- * Copyright (C) 2014 The Jalview Authors
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with Jalview. If not, see .
- * The Jalview Authors are detailed in the 'AUTHORS' file.
+ * This class was automatically generated with
+ * Castor 1.1, using an XML
+ * Schema.
+ * $Id$
*/
+
package jalview.binding;
//---------------------------------/
//- Imported classes and packages -/
//---------------------------------/
-import jalview.util.MessageManager;
-
import org.exolab.castor.xml.Marshaller;
import org.exolab.castor.xml.Unmarshaller;
@@ -188,11 +173,9 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._annotationList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "getAnnotation",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._annotationList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException(
+ "getAnnotation: Index value '" + index + "' not in range [0.."
+ + (this._annotationList.size() - 1) + "]");
}
return (jalview.binding.Annotation) _annotationList.get(index);
@@ -248,11 +231,9 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._sequenceList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "getSequence",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._sequenceList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException(
+ "getSequence: Index value '" + index + "' not in range [0.."
+ + (this._sequenceList.size() - 1) + "]");
}
return (jalview.binding.Sequence) _sequenceList.get(index);
@@ -447,11 +428,9 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._annotationList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "setAnnotation",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._annotationList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException(
+ "setAnnotation: Index value '" + index + "' not in range [0.."
+ + (this._annotationList.size() - 1) + "]");
}
this._annotationList.set(index, vAnnotation);
@@ -500,11 +479,9 @@ public class SequenceSet implements java.io.Serializable
// check bounds for index
if (index < 0 || index >= this._sequenceList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "setSequence",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._sequenceList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException(
+ "setSequence: Index value '" + index + "' not in range [0.."
+ + (this._sequenceList.size() - 1) + "]");
}
this._sequenceList.set(index, vSequence);
@@ -542,8 +519,8 @@ public class SequenceSet implements java.io.Serializable
throws org.exolab.castor.xml.MarshalException,
org.exolab.castor.xml.ValidationException
{
- return (jalview.binding.SequenceSet) Unmarshaller.unmarshal(
- jalview.binding.SequenceSet.class, reader);
+ return (jalview.binding.SequenceSet) Unmarshaller
+ .unmarshal(jalview.binding.SequenceSet.class, reader);
}
/**