X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fcommands%2FChangeCaseCommand.java;h=49faa50ec476d2202514cdbcbe0ad97c766edb2a;hb=bb9b4018d314ed5858504faf2bc848178bc9f6a9;hp=ad5c937fa7ac109fa452c8b6b574f8d02fbd2638;hpb=ebb678af128304dc13e1b6ec9e0961489bf83d39;p=jalview.git

diff --git a/src/jalview/commands/ChangeCaseCommand.java b/src/jalview/commands/ChangeCaseCommand.java
index ad5c937..49faa50 100644
--- a/src/jalview/commands/ChangeCaseCommand.java
+++ b/src/jalview/commands/ChangeCaseCommand.java
@@ -69,14 +69,15 @@ public class ChangeCaseCommand implements CommandI
     for (int r = 0; r < regions.length; r++)
     {
       start = regions[r][0];
-      end = regions[r][1];
       for (int s = 0; s < seqs.length; s++)
       {
         sequence = seqs[s].getSequence();
         StringBuffer newSeq = new StringBuffer();
 
-        if (end > sequence.length())
+        if (regions[r][1] > sequence.length())
           end = sequence.length();
+        else
+          end = regions[r][1];
 
         if (start > 0)
         {