X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fcommands%2FRemoveGapColCommand.java;h=1e9b83299d897e7142c9008b49c84bc1851f8b41;hb=7bc226b58110fa26d9dbd3f0c78095d06909ffc3;hp=d3aebdb9e2356778e9d122abbcafaa5e2571e9cb;hpb=dd74fc4938723fe5ec48d4e5fdcfbe58ac42a48d;p=jalview.git

diff --git a/src/jalview/commands/RemoveGapColCommand.java b/src/jalview/commands/RemoveGapColCommand.java
index d3aebdb..1e9b832 100644
--- a/src/jalview/commands/RemoveGapColCommand.java
+++ b/src/jalview/commands/RemoveGapColCommand.java
@@ -1,7 +1,8 @@
 package jalview.commands;
-  /*
+
+/*
  * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
  *
  * This program is free software; you can redistribute it and/or
  * modify it under the terms of the GNU General Public License
@@ -20,7 +21,8 @@ package jalview.commands;
 
 import jalview.datamodel.*;
 
-public class RemoveGapColCommand  extends EditCommand
+public class RemoveGapColCommand
+    extends EditCommand
 {
   int columnsDeleted;
   public RemoveGapColCommand(String description,
@@ -32,7 +34,7 @@ public class RemoveGapColCommand  extends EditCommand
     int j, jSize = seqs.length;
 
     int startCol = -1, endCol = -1;
-    columnsDeleted=0;
+    columnsDeleted = 0;
 
     edits = new Edit[0];
 
@@ -48,7 +50,9 @@ public class RemoveGapColCommand  extends EditCommand
           if (!jalview.util.Comparison.isGap(seqs[j].getCharAt(i)))
           {
             if (delete)
+            {
               endCol = i;
+            }
 
             delete = false;
             break;
@@ -77,19 +81,18 @@ public class RemoveGapColCommand  extends EditCommand
 
     if (delete && startCol > -1)
     {
-       //This is for empty columns at the
-       //end of the alignment
+      //This is for empty columns at the
+      //end of the alignment
 
       this.appendEdit(DELETE_GAP, seqs,
-                        startCol - columnsDeleted,
-                        end - startCol +1,
-                        al,
-                        false);
+                      startCol - columnsDeleted,
+                      end - startCol + 1,
+                      al,
+                      false);
 
-      columnsDeleted += (end - startCol +1);
+      columnsDeleted += (end - startCol + 1);
     }
 
-
     performEdit(0);
   }