X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fcommands%2FSlideSequencesCommand.java;h=8a2705900c0f883aaa8393f03efa1885866dcf47;hb=a23cc416cd520ac6dec6052591575b264f5d25bc;hp=7df24ba77f289b3cd7234a4fd635b1cb55363532;hpb=59d682209891099d46b960509907c79e3fb276fe;p=jalview.git
diff --git a/src/jalview/commands/SlideSequencesCommand.java b/src/jalview/commands/SlideSequencesCommand.java
index 7df24ba..8a27059 100644
--- a/src/jalview/commands/SlideSequencesCommand.java
+++ b/src/jalview/commands/SlideSequencesCommand.java
@@ -1,23 +1,26 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.commands;
-import jalview.datamodel.*;
+import jalview.datamodel.SequenceI;
public class SlideSequencesCommand extends EditCommand
{
@@ -34,21 +37,29 @@ public class SlideSequencesCommand extends EditCommand
for (i = 0; i < lSize; i++)
{
for (j = 0; j < slideSize; j++)
+ {
if (!jalview.util.Comparison.isGap(seqsLeft[i].getCharAt(j)))
{
gapsInsertedBegin = true;
break;
}
+ }
}
+ Edit e = null;
+
if (!gapsInsertedBegin)
- edits = new Edit[]
- { new Edit(DELETE_GAP, seqsLeft, 0, slideSize, gapChar) };
+ {
+ e = new Edit(Action.DELETE_GAP, seqsLeft, 0, slideSize, gapChar);
+ setEdit(e);
+ }
else
- edits = new Edit[]
- { new Edit(INSERT_GAP, seqsRight, 0, slideSize, gapChar) };
+ {
+ e = new Edit(Action.INSERT_GAP, seqsRight, 0, slideSize, gapChar);
+ setEdit(e);
+ }
- performEdit(0, null);
+ performEdit(e, null);
}
public boolean getGapsInsertedBegin()
@@ -60,12 +71,12 @@ public class SlideSequencesCommand extends EditCommand
{
boolean same = false;
- if (command.edits[0].seqs.length == edits[0].seqs.length)
+ if (command.getEdit(0).seqs.length == getEdit(0).seqs.length)
{
same = true;
- for (int i = 0; i < command.edits[0].seqs.length; i++)
+ for (int i = 0; i < command.getEdit(0).seqs.length; i++)
{
- if (edits[0].seqs[i] != command.edits[0].seqs[i])
+ if (getEdit(0).seqs[i] != command.getEdit(0).seqs[i])
{
same = false;
}
@@ -74,10 +85,7 @@ public class SlideSequencesCommand extends EditCommand
if (same)
{
- Edit[] temp = new Edit[command.edits.length + 1];
- System.arraycopy(command.edits, 0, temp, 0, command.edits.length);
- command.edits = temp;
- command.edits[command.edits.length - 1] = edits[0];
+ command.addEdit(getEdit(0));
}
return same;