X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fdatamodel%2FAlignment.java;h=08754509f72d7a1da743bc20db4f398e6689d48d;hb=6bf0d980ff438999c4ddc535c0ff76bad2e8bde7;hp=f78f9587028d2b37f4e284af9956b11502ccf6af;hpb=ae559c20f3afdc169eaaf6d8c9ce0100bee96c7b;p=jalview.git

diff --git a/src/jalview/datamodel/Alignment.java b/src/jalview/datamodel/Alignment.java
index f78f958..0875450 100755
--- a/src/jalview/datamodel/Alignment.java
+++ b/src/jalview/datamodel/Alignment.java
@@ -389,6 +389,14 @@ public class Alignment implements AlignmentI
   {
     groups.clear();
     superGroup.clear();
+   int i=0;
+    while (i < sequences.size()) {
+     SequenceI s = getSequenceAt(i);
+     s.setColor(java.awt.Color.white);
+     i++;
+   }
+
+
   }
 
   /**    */