X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fdatamodel%2FAlignment.java;h=26379d3484b202af4bd3e82e88feadc661f46cd2;hb=74d5ca6390288f6cd6cb445cccc728802806a29a;hp=22d23bc299735b1c469e7f4559ed4ae021099c0d;hpb=653901be5f271505cfb10eb449fa13bed899a94e;p=jalview.git diff --git a/src/jalview/datamodel/Alignment.java b/src/jalview/datamodel/Alignment.java index 22d23bc..26379d3 100755 --- a/src/jalview/datamodel/Alignment.java +++ b/src/jalview/datamodel/Alignment.java @@ -42,13 +42,13 @@ import java.util.Vector; /** * Data structure to hold and manipulate a multiple sequence alignment - */ -/** - * @author JimP * + * @author JimP */ public class Alignment implements AlignmentI { + private static final SequenceGroup[] NO_GROUPS = new SequenceGroup[0]; + private Alignment dataset; private List sequences; @@ -61,8 +61,6 @@ public class Alignment implements AlignmentI private List codonFrameList; - private static final SequenceGroup[] noGroups = new SequenceGroup[0]; - /* * persistent object to hold result of findAllGroups(SequenceI) */ @@ -419,7 +417,7 @@ public class Alignment implements AlignmentI int gSize = groups.size(); if (gSize == 0) { - return noGroups; + return NO_GROUPS; } groupsForSequence.clear(); for (int i = 0; i < gSize; i++)