X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fdatamodel%2FAlignmentI.java;h=06e93d7a4322aea1f8b8feb2267d0a071e4f2c22;hb=54904100ca490c7ca4484a88bf40963e48a35eec;hp=e62c8c22f53739da76a3e08ff4b03a387f18ec29;hpb=6a52231af31721231478e6ff3a553bbe23ee863f;p=jalview.git

diff --git a/src/jalview/datamodel/AlignmentI.java b/src/jalview/datamodel/AlignmentI.java
index e62c8c2..06e93d7 100755
--- a/src/jalview/datamodel/AlignmentI.java
+++ b/src/jalview/datamodel/AlignmentI.java
@@ -270,5 +270,9 @@ public interface AlignmentI
     public void adjustSequenceAnnotations();
 
     public HiddenSequences getHiddenSequences();
-
+    /**
+     * Compact representation of alignment
+     * @return CigarArray
+     */
+    public CigarArray getCompactAlignment();
 }