X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fdatamodel%2FCigarArray.java;h=aab82a1e0cd02d5c8237e75271c42c3341f7544d;hb=c2e5d3d1ebe3b283bdde15637c590721cd6c5637;hp=f6e586227c3c76ef20328b9cdc5a962340620e6b;hpb=37de9310bec3501cbc6381e0c3dcb282fcaad812;p=jalview.git

diff --git a/src/jalview/datamodel/CigarArray.java b/src/jalview/datamodel/CigarArray.java
index f6e5862..aab82a1 100644
--- a/src/jalview/datamodel/CigarArray.java
+++ b/src/jalview/datamodel/CigarArray.java
@@ -20,6 +20,8 @@
  */
 package jalview.datamodel;
 
+import htsjdk.samtools.Cigar;
+
 import java.util.List;
 
 public class CigarArray extends CigarBase
@@ -85,12 +87,12 @@ public class CigarArray extends CigarBase
    * @param columnSelection
    * @param selectionGroup
    */
-  public CigarArray(AlignmentI alignment, ColumnSelection columnSelection,
+  public CigarArray(AlignmentI alignment, HiddenColumns hidden,
           SequenceGroup selectionGroup)
   {
     this(constructSeqCigarArray(alignment, selectionGroup));
     constructFromAlignment(alignment,
-            columnSelection != null ? columnSelection.getHiddenColumns()
+            hidden != null ? hidden.getHiddenRegions()
                     : null, selectionGroup);
   }