X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fdatamodel%2FFeatureProperties.java;h=6447f1c9535b6229b53056bc9704618c69289201;hb=28a00b99bbd8f25fd894d5941149f2e1a45ed0f2;hp=d81a31c41e7a58556eee141fc21cdb923586f0b3;hpb=fbb2be65b1e9fb72a250d9dfda61526621687de6;p=jalview.git diff --git a/src/jalview/datamodel/FeatureProperties.java b/src/jalview/datamodel/FeatureProperties.java index d81a31c..6447f1c 100644 --- a/src/jalview/datamodel/FeatureProperties.java +++ b/src/jalview/datamodel/FeatureProperties.java @@ -1,24 +1,48 @@ +/* + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6) + * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + */ package jalview.datamodel; /** * A set of feature property constants used by jalview + * * @author JimP - * + * */ public class FeatureProperties { public static final String EXONPOS = "exon number"; + public static final String EXONPRODUCT = "product"; + /** - * lookup feature type for a particular database to see if its a coding region feature + * lookup feature type for a particular database to see if its a coding region + * feature + * * @param dbrefsource * @param string * @return */ public static boolean isCodingFeature(String dbrefsource, String type) { - return ((dbrefsource==null || dbrefsource.equalsIgnoreCase(DBRefSource.EMBL) || dbrefsource.equalsIgnoreCase(DBRefSource.EMBLCDS)) - && type.equalsIgnoreCase("CDS")); + return ((dbrefsource == null + || dbrefsource.equalsIgnoreCase(DBRefSource.EMBL) || dbrefsource + .equalsIgnoreCase(DBRefSource.EMBLCDS)) && type + .equalsIgnoreCase("CDS")); } }