X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fext%2Fensembl%2FEnsemblXref.java;h=27c448e89d6f01c908f845a20e025718eb82034b;hb=9317de4ce997ec39dee25ec507c12807c5067d7d;hp=c0b00b182f8fc528974dff004831e33607c82f4d;hpb=604cbee405a837565ba1a74aa9bddd62aed685ab;p=jalview.git

diff --git a/src/jalview/ext/ensembl/EnsemblXref.java b/src/jalview/ext/ensembl/EnsemblXref.java
index c0b00b1..27c448e 100644
--- a/src/jalview/ext/ensembl/EnsemblXref.java
+++ b/src/jalview/ext/ensembl/EnsemblXref.java
@@ -124,8 +124,11 @@ class EnsemblXref extends EnsemblRestClient
       if (url != null)
       {
         br = getHttpResponse(url, ids);
+        if (br != null)
+        {
+          result = parseResponse(br);
+        }
       }
-      return (parseResponse(br));
     } catch (IOException e)
     {
       // ignore
@@ -168,16 +171,13 @@ class EnsemblXref extends EnsemblRestClient
       while (rvals.hasNext())
       {
         JSONObject val = (JSONObject) rvals.next();
-        String dbName = val.get("dbname").toString();
-        if (dbName.equals(GO_GENE_ONTOLOGY))
-        {
-          continue;
-        }
+        String db = val.get("dbname").toString();
         String id = val.get("primary_id").toString();
-        if (dbName != null && id != null)
+        if (db != null && id != null
+                && !GO_GENE_ONTOLOGY.equals(db))
         {
-          dbName = DBRefUtils.getCanonicalName(dbName);
-          DBRefEntry dbref = new DBRefEntry(dbName, getXRefVersion(), id);
+          db = DBRefUtils.getCanonicalName(db);
+          DBRefEntry dbref = new DBRefEntry(db, getXRefVersion(), id);
           result.add(dbref);
         }
       }
@@ -211,7 +211,7 @@ class EnsemblXref extends EnsemblRestClient
   protected URL getUrl(String identifier)
   {
     String url = getDomain() + "/xrefs/id/" + identifier
-            + "?content-type=application/json&all_levels=1";
+            + CONTENT_TYPE_JSON + "&all_levels=1";
     try
     {
       return new URL(url);