X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fext%2Fso%2FSequenceOntology.java;fp=src%2Fjalview%2Fext%2Fso%2FSequenceOntology.java;h=138aa58dc669abecd5d924339182387705145bfa;hb=304e64fb34b32659be1bbfd39fb4e15b2f79586e;hp=89b241592e9882f3acc3cfe8fbda63f427a8643b;hpb=cfb79b69d9fa44595560659bd95d1d1cd27677ad;p=jalview.git

diff --git a/src/jalview/ext/so/SequenceOntology.java b/src/jalview/ext/so/SequenceOntology.java
index 89b2415..138aa58 100644
--- a/src/jalview/ext/so/SequenceOntology.java
+++ b/src/jalview/ext/so/SequenceOntology.java
@@ -115,7 +115,7 @@ public class SequenceOntology implements SequenceOntologyI
         }
       }
       long elapsed = System.currentTimeMillis() - now;
-      System.out.println("Loaded Sequence Ontology from " + zipFile + " ("
+      Cache.log.info("Loaded Sequence Ontology from " + zipFile + " ("
               + elapsed + "ms)");
     } catch (Exception e)
     {
@@ -337,7 +337,7 @@ public class SequenceOntology implements SequenceOntologyI
     {
       if (!termsNotFound.contains(term))
       {
-        System.err.println("SO term " + term + " invalid");
+        Cache.log.error("SO term " + term + " invalid");
         termsNotFound.add(term);
       }
     }