X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fgui%2FAlignFrame.java;h=1b2410a3bc347c080a812ed443c8e29b30f39463;hb=5d59bb58f5bcecc6b240d125e13bbe1f1868f681;hp=80838e2ce6826b82c8bba19e9563448bea42147b;hpb=8c6722b27ff92e3610376295e2b4363f942d9969;p=jalview.git

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 80838e2..1b2410a 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -1306,6 +1306,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
 
     try
     {
+      Desktop.setCurrentAlignFrame(this);
       cap.setText(new FormatAdapter().formatSequences(e.getActionCommand(),
               viewport.getAlignment(), omitHidden,
               viewport.getColumnSelection()));
@@ -5787,8 +5788,8 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
 
   public void setShowSeqFeatures(boolean b)
   {
-    showSeqFeatures.setSelected(true);
-    viewport.setShowSequenceFeatures(true);
+    showSeqFeatures.setSelected(b);
+    viewport.setShowSequenceFeatures(b);
   }
 
   /*