X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fgui%2FAlignmentPanel.java;h=3f7a78164da803c1748044fd9ba7107422bb354e;hb=1f183a4e9d63b2af6cf7184274affc80e11ef344;hp=7856a42ae48c081daf49d12b4f05ec1b858b7e8e;hpb=4e869de99eab7db5aa6661b6af7cb465bf1b2b11;p=jalview.git

diff --git a/src/jalview/gui/AlignmentPanel.java b/src/jalview/gui/AlignmentPanel.java
index 7856a42..3f7a781 100755
--- a/src/jalview/gui/AlignmentPanel.java
+++ b/src/jalview/gui/AlignmentPanel.java
@@ -122,8 +122,8 @@ public class AlignmentPanel extends GAlignmentPanel implements AdjustmentListene
        av.setGlobalColourScheme( ccs );
 
     }
-    seqPanel.seqCanvas.paintFlag = true;
-    repaint();
+
+    RefreshPanels();
   }
 
   public void RefreshPanels()