X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fgui%2FAnnotationLabels.java;fp=src%2Fjalview%2Fgui%2FAnnotationLabels.java;h=b94a615fde23941f0c20521f211edd0f8948b4f3;hb=106a3890f956e2aa7780b2985f4326655912a558;hp=d07cae270ebb4f259e8a21a7427f889fb8e9695e;hpb=98558735e9208afa98bb155bd5350ad0a680ca24;p=jalview.git

diff --git a/src/jalview/gui/AnnotationLabels.java b/src/jalview/gui/AnnotationLabels.java
index d07cae2..b94a615 100755
--- a/src/jalview/gui/AnnotationLabels.java
+++ b/src/jalview/gui/AnnotationLabels.java
@@ -705,7 +705,7 @@ public class AnnotationLabels extends JPanel
         d = ap.annotationSpaceFillerHolder.getPreferredSize();
         ap.annotationSpaceFillerHolder
                 .setPreferredSize(new Dimension(d.width, d.height - dif));
-        ap.paintAlignment(true);
+        ap.paintAlignment(true, false);
       }
 
       ap.addNotify();
@@ -855,7 +855,7 @@ public class AnnotationLabels extends JPanel
               }
             }
 
-            ap.paintAlignment(false);
+            ap.paintAlignment(false, false);
             PaintRefresher.Refresh(ap, ap.av.getSequenceSetId());
             ap.av.sendSelection();
           }
@@ -912,7 +912,7 @@ public class AnnotationLabels extends JPanel
               sg.addSequence(aa[selectedRow].sequenceRef, false);
             }
             ap.av.setSelectionGroup(sg);
-            ap.paintAlignment(false);
+            ap.paintAlignment(false, false);
             PaintRefresher.Refresh(ap, ap.av.getSequenceSetId());
             ap.av.sendSelection();
           }