X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fgui%2FAppJmol.java;fp=src%2Fjalview%2Fgui%2FAppJmol.java;h=4087e637aab37a500f8822e1d0c3c5670374d523;hb=42f4227ed213d422a87d3b22fc9e85d14ffaf53f;hp=0768c008d64d7a9808bf4520176f05e8c13be258;hpb=09ec96d9ac0fd717d6cf32417d9916cca781d92c;p=jalview.git

diff --git a/src/jalview/gui/AppJmol.java b/src/jalview/gui/AppJmol.java
index 0768c00..4087e63 100644
--- a/src/jalview/gui/AppJmol.java
+++ b/src/jalview/gui/AppJmol.java
@@ -26,6 +26,7 @@ import jalview.datamodel.AlignmentI;
 import jalview.datamodel.PDBEntry;
 import jalview.datamodel.SequenceI;
 import jalview.gui.StructureViewer.ViewerType;
+import jalview.structure.StructureCommand;
 import jalview.structures.models.AAStructureBindingModel;
 import jalview.util.BrowserLauncher;
 import jalview.util.ImageMaker;
@@ -245,8 +246,8 @@ public class AppJmol extends StructureViewerBase
     {
       command = "";
     }
-    jmb.executeCommand(command, false);
-    jmb.executeCommand("set hoverDelay=0.1", false);
+    jmb.executeCommand(new StructureCommand(command), false);
+    jmb.executeCommand(new StructureCommand("set hoverDelay=0.1"), false);
     jmb.setFinishedInit(true);
   }
 
@@ -323,7 +324,7 @@ public class AppJmol extends StructureViewerBase
       cmd.append("loadingJalviewdata=true\nload APPEND ");
       cmd.append(filesString);
       cmd.append("\nloadingJalviewdata=null");
-      final String command = cmd.toString();
+      final StructureCommand command = new StructureCommand(cmd.toString());
       lastnotify = jmb.getLoadNotifiesHandled();
 
       try