X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fgui%2FCutAndPasteTransfer.java;h=1161340427ea42ded540ba043ea4d787e97bd74b;hb=be1666f6c9be6b18051b233abdde85962ac0c89a;hp=8665320afd73820c1d7fda6197dd7af5ab461975;hpb=ce9b498aa2db9eb442ad44b9fa22621f89e7eeeb;p=jalview.git

diff --git a/src/jalview/gui/CutAndPasteTransfer.java b/src/jalview/gui/CutAndPasteTransfer.java
index 8665320..1161340 100644
--- a/src/jalview/gui/CutAndPasteTransfer.java
+++ b/src/jalview/gui/CutAndPasteTransfer.java
@@ -23,7 +23,9 @@ package jalview.gui;
 import jalview.api.AlignViewportI;
 import jalview.api.AlignmentViewPanel;
 import jalview.api.ComplexAlignFile;
+import jalview.api.FeatureSettingsModelI;
 import jalview.api.FeaturesDisplayedI;
+import jalview.api.FeaturesSourceI;
 import jalview.bin.Jalview;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.ColumnSelection;
@@ -252,12 +254,19 @@ public class CutAndPasteTransfer extends GCutAndPasteTransfer
     {
       String title = MessageManager.formatMessage(
               "label.input_cut_paste_params", new String[] { format });
+      FeatureSettingsModelI proxyColourScheme = source
+              .getFeatureColourScheme();
+
       /*
        * if the view panel was closed its alignment is nulled
        * and this is an orphaned cut and paste window
        */
       if (viewport != null && viewport.getAlignment() != null)
       {
+        if (proxyColourScheme != null)
+        {
+          viewport.applyFeaturesStyle(proxyColourScheme);
+        }
         ((AlignViewport) viewport).addAlignment(al, title);
       }
       else
@@ -291,8 +300,15 @@ public class CutAndPasteTransfer extends GCutAndPasteTransfer
         {
           af = new AlignFrame(al, AlignFrame.DEFAULT_WIDTH,
                   AlignFrame.DEFAULT_HEIGHT);
+          if (source instanceof FeaturesSourceI)
+          {
+            af.getViewport().setShowSequenceFeatures(true);
+          }
+        }
+        if (proxyColourScheme != null)
+        {
+          af.getViewport().applyFeaturesStyle(proxyColourScheme);
         }
-
         af.currentFileFormat = format;
         Desktop.addInternalFrame(af, title, AlignFrame.DEFAULT_WIDTH,
                 AlignFrame.DEFAULT_HEIGHT);
@@ -342,7 +358,7 @@ public class CutAndPasteTransfer extends GCutAndPasteTransfer
   @Override
   public void textarea_mousePressed(MouseEvent e)
   {
-    if (SwingUtilities.isRightMouseButton(e))
+    if (e.isPopupTrigger())
     {
       JPopupMenu popup = new JPopupMenu(
               MessageManager.getString("action.edit"));