X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fgui%2FCutAndPasteTransfer.java;h=a3fa7c7f2918ae180a4c57862fdbdd6047c2b09a;hb=442b6bc246ee877d5e977baf80fd96299e0e05c4;hp=175a609d7833ccd57575020950d941b749e6e6a4;hpb=588042b69abf8e60bcc950b24c283933c7dd422f;p=jalview.git

diff --git a/src/jalview/gui/CutAndPasteTransfer.java b/src/jalview/gui/CutAndPasteTransfer.java
index 175a609..a3fa7c7 100755
--- a/src/jalview/gui/CutAndPasteTransfer.java
+++ b/src/jalview/gui/CutAndPasteTransfer.java
@@ -1,6 +1,6 @@
 /*
  * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
  *
  * This program is free software; you can redistribute it and/or
  * modify it under the terms of the GNU General Public License
@@ -27,30 +27,117 @@ import jalview.datamodel.*;
 import jalview.io.*;
 import jalview.jbgui.*;
 
+/**
+ * DOCUMENT ME!
+ *
+ * @author $author$
+ * @version $Revision$
+ */
 public class CutAndPasteTransfer
     extends GCutAndPasteTransfer
 {
-  public void setForInput()
+
+  AlignViewport viewport;
+
+  public CutAndPasteTransfer()
+  {
+    SwingUtilities.invokeLater(new Runnable()
+    {
+      public void run()
+      {
+        textarea.requestFocus();
+      }
+    });
+
+  }
+
+  /**
+   * DOCUMENT ME!
+   */
+  public void setForInput(AlignViewport viewport)
   {
+    this.viewport = viewport;
+    if (viewport != null)
+    {
+      ok.setText("Add");
+    }
+
     getContentPane().add(inputButtonPanel, java.awt.BorderLayout.SOUTH);
   }
 
+  /**
+   * DOCUMENT ME!
+   *
+   * @return DOCUMENT ME!
+   */
   public String getText()
   {
     return textarea.getText();
   }
 
+  /**
+   * DOCUMENT ME!
+   *
+   * @param text DOCUMENT ME!
+   */
   public void setText(String text)
   {
     textarea.setText(text);
   }
 
+  public void appendText(String text)
+  {
+    textarea.append(text);
+  }
+
+  public void save_actionPerformed(ActionEvent e)
+  {
+    JalviewFileChooser chooser = new JalviewFileChooser(
+        jalview.bin.Cache.getProperty(
+            "LAST_DIRECTORY"));
+
+    chooser.setAcceptAllFileFilterUsed(false);
+    chooser.setFileView(new JalviewFileView());
+    chooser.setDialogTitle("Save Text to File");
+    chooser.setToolTipText("Save");
+
+    int value = chooser.showSaveDialog(this);
+
+    if (value == JalviewFileChooser.APPROVE_OPTION)
+    {
+      try
+      {
+        java.io.PrintWriter out = new java.io.PrintWriter(
+            new java.io.FileWriter(chooser.getSelectedFile()));
+
+        out.print(getText());
+        out.close();
+      }
+      catch (Exception ex)
+      {
+        ex.printStackTrace();
+      }
+
+    }
+  }
+
+  /**
+   * DOCUMENT ME!
+   *
+   * @param e DOCUMENT ME!
+   */
   public void copyItem_actionPerformed(ActionEvent e)
   {
+    textarea.getSelectedText();
     Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard();
-    c.setContents(new StringSelection(textarea.getText()), null);
+    c.setContents(new StringSelection(textarea.getSelectedText()), null);
   }
 
+  /**
+   * DOCUMENT ME!
+   *
+   * @param e DOCUMENT ME!
+   */
   public void pasteMenu_actionPerformed(ActionEvent e)
   {
     Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard();
@@ -63,7 +150,7 @@ public class CutAndPasteTransfer
 
     try
     {
-      textarea.setText( (String) contents.getTransferData(
+      textarea.append( (String) contents.getTransferData(
           DataFlavor.stringFlavor));
     }
     catch (Exception ex)
@@ -71,52 +158,71 @@ public class CutAndPasteTransfer
     }
   }
 
+  /**
+   * DOCUMENT ME!
+   *
+   * @param e DOCUMENT ME!
+   */
   public void ok_actionPerformed(ActionEvent e)
   {
-    String format = IdentifyFile.Identify(getText(), "Paste");
-    SequenceI[] sequences = null;
-
-    if (FormatAdapter.formats.contains(format))
-    {
-      sequences = FormatAdapter.readFile(getText(), "Paste", format);
-    }
+    String format = new IdentifyFile().Identify(getText(), "Paste");
+    Alignment al = null;
 
-    if (sequences != null)
+    if (FormatAdapter.isValidFormat(format))
     {
-      AlignFrame af = new AlignFrame(new Alignment(sequences));
-      af.currentFileFormat = format;
-      Desktop.addInternalFrame(af, "Cut & Paste input - " + format,
-                               AlignFrame.NEW_WINDOW_WIDTH,
-                               AlignFrame.NEW_WINDOW_HEIGHT);
-      af.statusBar.setText("Successfully pasted alignment file");
-
       try
       {
-        af.setMaximum(Preferences.showFullscreen);
+        al = new FormatAdapter().readFile(getText(), "Paste", format);
       }
-      catch (Exception ex)
+      catch (java.io.IOException ex)
       {
+        JOptionPane.showInternalMessageDialog(Desktop.desktop,
+                                              "Couldn't read the pasted text.\n" +
+                                              ex.toString(),
+                                              "Error parsing text",
+                                              JOptionPane.WARNING_MESSAGE);
       }
+    }
 
-      try
+    if (al != null)
+    {
+      if (viewport != null)
       {
-        this.setClosed(true);
+        for (int i = 0; i < al.getHeight(); i++)
+        {
+          viewport.getAlignment().addSequence(al.getSequenceAt(i));
+        }
+
+        viewport.firePropertyChange("alignment", null,
+                                    viewport.getAlignment().getSequences());
       }
-      catch (Exception ex)
+      else
       {
+        AlignFrame af = new AlignFrame(al,
+                                       AlignFrame.DEFAULT_WIDTH,
+                                       AlignFrame.DEFAULT_HEIGHT);
+        af.currentFileFormat = format;
+        Desktop.addInternalFrame(af, "Cut & Paste input - " + format,
+                                 AlignFrame.DEFAULT_WIDTH,
+                                 AlignFrame.DEFAULT_HEIGHT);
+        af.statusBar.setText("Successfully pasted alignment file");
+
+        try
+        {
+          af.setMaximum(jalview.bin.Cache.getDefault("SHOW_FULLSCREEN", false));
+        }
+        catch (Exception ex)
+        {
+        }
       }
     }
-    else
-    {
-      JOptionPane.showInternalMessageDialog(Desktop.desktop,
-                                            "Couldn't read the pasted text.\n" +
-                                            "Formats currently supported are\n" +
-                                            "Fasta, MSF, Clustal, BLC, PIR, MSP, and PFAM",
-                                            "Error parsing text",
-                                            JOptionPane.WARNING_MESSAGE);
-    }
   }
 
+  /**
+   * DOCUMENT ME!
+   *
+   * @param e DOCUMENT ME!
+   */
   public void cancel_actionPerformed(ActionEvent e)
   {
     try
@@ -127,4 +233,33 @@ public class CutAndPasteTransfer
     {
     }
   }
+
+  public void textarea_mousePressed(MouseEvent e)
+  {
+    if (SwingUtilities.isRightMouseButton(e))
+    {
+      JPopupMenu popup = new JPopupMenu("Edit");
+      JMenuItem item = new JMenuItem("Copy");
+      item.addActionListener(new ActionListener()
+      {
+        public void actionPerformed(ActionEvent e)
+        {
+          copyItem_actionPerformed(e);
+        }
+      });
+      popup.add(item);
+      item = new JMenuItem("Paste");
+      item.addActionListener(new ActionListener()
+      {
+        public void actionPerformed(ActionEvent e)
+        {
+          pasteMenu_actionPerformed(e);
+        }
+      });
+      popup.add(item);
+      popup.show(this, e.getX() + 10, e.getY() + textarea.getY() + 40);
+
+    }
+  }
+
 }