X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fgui%2FIdPanel.java;h=9d1cae4dba22f16dff4ea3866b0a3a84e958011a;hb=ff7e72d6df848ca0694d25bde0e9616e8df1d18e;hp=5f1bb56f531119ddec1f4a4652a8191b6844e491;hpb=1c0b78fc0ca510ed47ba7c2c27f63f4f9276e2af;p=jalview.git
diff --git a/src/jalview/gui/IdPanel.java b/src/jalview/gui/IdPanel.java
index 5f1bb56..9d1cae4 100755
--- a/src/jalview/gui/IdPanel.java
+++ b/src/jalview/gui/IdPanel.java
@@ -1,20 +1,19 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
- * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
*
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
*
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
*
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
*/
package jalview.gui;
@@ -43,8 +42,9 @@ public class IdPanel extends JPanel implements MouseListener,
protected AlignmentPanel alignPanel;
ScrollThread scrollThread = null;
+
String linkImageURL;
-
+
int offy;
// int width;
@@ -56,9 +56,9 @@ public class IdPanel extends JPanel implements MouseListener,
* Creates a new IdPanel object.
*
* @param av
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param parent
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public IdPanel(AlignViewport av, AlignmentPanel parent)
{
@@ -78,16 +78,16 @@ public class IdPanel extends JPanel implements MouseListener,
* DOCUMENT ME!
*
* @param e
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void mouseMoved(MouseEvent e)
{
SeqPanel sp = alignPanel.seqPanel;
int seq = Math.max(0, sp.findSeq(e));
String tmp;
- if (seq > -1 && seq < av.alignment.getHeight())
+ if (seq > -1 && seq < av.getAlignment().getHeight())
{
- SequenceI sequence = av.alignment.getSequenceAt(seq);
+ SequenceI sequence = av.getAlignment().getSequenceAt(seq);
StringBuffer tip = new StringBuffer();
tip.append("");
@@ -123,8 +123,9 @@ public class IdPanel extends JPanel implements MouseListener,
{
int sz = -tip.length();
tfeat[0] = features[i];
- sp.appendFeatures(tip, linkImageURL, 0, tfeat,sp.seqCanvas.fr.minmax);
- sz+=tip.length();
+ sp.appendFeatures(tip, linkImageURL, 0, tfeat,
+ sp.seqCanvas.fr.minmax);
+ sz += tip.length();
maxWidth = Math.max(maxWidth, sz);
}
}
@@ -138,8 +139,8 @@ public class IdPanel extends JPanel implements MouseListener,
tip.append("