X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fgui%2FJalview2XML.java;h=562d5cbbd96b4dfdf04aaa92fb1051fe0270379e;hb=b8446598292b2332e9919cd121981fa20aad43cc;hp=300cbd5bf7188b4c899e833bfcb4519884b7d000;hpb=b222f8108c2e8af459d814d0811decddca9f1a2f;p=jalview.git

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index 300cbd5..562d5cb 100755
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -804,6 +804,7 @@ public class Jalview2XML
 
     String loadPDBFile(String file, String pdbId)
     {
+      System.out.println("load file "+file);
       try
       {
         JarInputStream jin = null;
@@ -911,14 +912,17 @@ public class Jalview2XML
               jalview.datamodel.PDBEntry entry = new jalview.datamodel.PDBEntry();
               entry.setId(ids[p].getId());
               entry.setType(ids[p].getType());
-              if(!pdbloaded.containsKey(ids[p].getId()))
+              if (ids[p].getFile() != null)
               {
-                String tmppdb = loadPDBFile(file, ids[p].getId());
-                entry.setFile(tmppdb);
-                pdbloaded.put(ids[p].getId(), tmppdb);
+                if (!pdbloaded.containsKey(ids[p].getFile()))
+                {
+                  String tmppdb = loadPDBFile(file, ids[p].getId());
+                  entry.setFile(tmppdb);
+                  pdbloaded.put(ids[p].getId(), tmppdb);
+                }
+                else
+                  entry.setFile(pdbloaded.get(ids[p].getId()).toString());
               }
-              else
-                entry.setFile(pdbloaded.get(ids[p].getId()).toString());
 
               al.getSequenceAt(i).getDatasetSequence().addPDBId(entry);
             }