X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fgui%2FPopupMenu.java;h=0957d28d1042e22f693c54055e504a0bf2f9800b;hb=4b8e37b39d6599396ea8538e1737b65eb869aa21;hp=e84a79922034ab829326e8ca4dbf1fd4f88fcbca;hpb=51ed032e5b45fbcb9d011fc93763cc391752d5b0;p=jalview.git

diff --git a/src/jalview/gui/PopupMenu.java b/src/jalview/gui/PopupMenu.java
index e84a799..0957d28 100644
--- a/src/jalview/gui/PopupMenu.java
+++ b/src/jalview/gui/PopupMenu.java
@@ -2109,20 +2109,7 @@ public class PopupMenu extends JPopupMenu
     // or we simply trust the user wants
     // wysiwig behaviour
 
-    AlignmentView selvew = ap.av.getAlignmentView(true, false);
-    AlignmentI aselview = selvew.getVisibleAlignment(ap.av
-            .getGapCharacter());
-    List<AlignmentAnnotation> ala = (ap.av
-            .getVisibleAlignmentAnnotation(true));
-    if (ala != null)
-    {
-      for (AlignmentAnnotation aa : ala)
-      {
-        aselview.addAnnotation(aa);
-      }
-    }
-    cap.setText(new FormatAdapter().formatSequences(e.getActionCommand(),
-            aselview, null, null, null));
+    cap.setText(new FormatAdapter().formatSequences(e.getActionCommand(), ap.av, true));
   }
 
   public void pdbFromFile_actionPerformed()